Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0204 ATGGCGAGTTTAGGTGCGATTCTGAGATATCCAGATGAATTTTACCCAATGCTTAAGCTGAAAATGGCGGCCAGGAACATCGAGAAGCAGATCCCTTCGGAACCGCATTGGGGATTCTGTTACACTATGCTCCACAAGGTTTCTAGAAGCTTCGCACTCGTTATCCGGCAACTCGGTCCAGATCTTCGTAATGCTGTTTGCATATTTTATTTGGTTCTTCGAGCACTTGATACCGTTGAGGATGATACCAGCATAGCTACAGATGTCAAGGTGCCGATACTAATAGAATTTTATCGCCACATATATGATCGTGATTGGCACTTTCCATGTGGCACAAAGGACTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCCTTTCTAGAGCTTGAAAAGACCTATCAGGAAGCAATTGAGGATATTACCAAAAGGATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAGTTGATGACTATGATGAATATTGTCACTATGTGGCTGGACTTGTCGGGCTAGGTTTATCAAAGCTTTTCCACTCCTCTGGTTTAGAAGATCTGGCTTCAGATTCCCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAACATTATTCGAGACTATCTGGAAGATATCAACGAGGTACCCAAGTCACGCATGTTTTGGCCTCGACAGATCTGGAGTAAATATGTTAACAAACTTGAGGATATGAAATATGAAGAGAACTCTATCAAGGCAGTGAAATGCTTAAATGACATGGTCACTAATGCCCTGATCCATGCTGAAGACTGCTTAAAATACATGTCTGATTTACGAGATTCAGCTATATTTCGCTTTTGTGCCATTCCCCAGATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAAGTCTTCAGAGGTGTGGTTAAAATGAGGCGCGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTTCTATGTTAGAGTCCAAGGTTGGCAAAAATGACCCCAATGCAACAAAAACATTGACTAGGCTAGAAGCTATACAGAAAACCTGCAGAGAATCTGGTCTCCTTAGTAAAAGGAAATCTTACATACTAAATAATGAAAATGGTTCAACCATTATTATCATACTGGTCATCATAGTCTCCATCATCTTTGCTTATCTCTCTGCTAATCACCAAAAATAA 1233 0.4039 MASLGAILRYPDEFYPMLKLKMAARNIEKQIPSEPHWGFCYTMLHKVSRSFALVIRQLGPDLRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIEFYRHIYDRDWHFPCGTKDYKVLMDQFHHVSTAFLELEKTYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGLSKLFHSSGLEDLASDSLSNSMGLFLQKTNIIRDYLEDINEVPKSRMFWPRQIWSKYVNKLEDMKYEENSIKAVKCLNDMVTNALIHAEDCLKYMSDLRDSAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASMLESKVGKNDPNATKTLTRLEAIQKTCRESGLLSKRKSYILNNENGSTIIIILVIIVSIIFAYLSANHQK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0204 410 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Lan13g0204 410 Gene3D Farnesyl Diphosphate Synthase 34 371 IPR008949 -
Lan13g0204 410 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 408 - -
Lan13g0204 410 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 408 IPR044844 GO:0004311
Lan13g0204 410 SFLD Isoprenoid Synthase Type I 37 325 - -
Lan13g0204 410 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Lan13g0204 410 SFLD Squalene/Phytoene Synthase Like 37 325 IPR002060 GO:0009058
Lan13g0204 410 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Lan13g0204 410 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Lan13g0204 410 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
Lan13g0204 410 SUPERFAMILY Terpenoid synthases 37 367 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0204 Lan-Chr13 1272595 1279096 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0204 K00801 - gmx:547940 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0204 13 1272595 1279096 Lan13g0204 13 1272595 1279096 ECH