LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan13g0198	ATGCCTGCTTTGCCTTCTTGCGTTGACCCTGCTACACTTTTAACTCCCGCCGGTCACATCTCTATTCCGATTCCGGTCACTTTTTCCGACGACTGGTCACCTTCTCTTTCATCCACCCTTTACAAGGTTGATGCTTGGGGTGCTCCTTACTTCGCCGTCAACTCCTCCTCCGGAAACATCACCGTCCGGCCACATGGCTCCGACACCATGATTCACCAGGAGATTGATTTGCTCAAAATTGTGAAGAAAGCTTCGGATTCGAAATCTTTAGGTGGACTCGGGTTACAGCTTCCTCTCATTGTTCGGTTCCCTGATGTACTAAAAAATCGACTCGAGTCTCTTCAATCTGCATTCAACTATGCAATTGAATCACGAGGTTATGAATCTCATTACCAAGGTGTTTATCCTGTGAAGTGTAACCAGGATCGGTTCATTGTGGAGGATATAGTTTCATTCGGGTCATCGTTTCGGTTCGGGTTAGAAGCCGGATCGAAACCCGAACTCTTACTCGCTATGAATTCCTTGTGTAAGGGAAGCCCAGAAGCGTTTCTTGTTTGCAATGGTTTTAAAGATAGTGAGTATATCACTCTTGCTCTTCTTGCTAGAAAGCTAGCCTTGAATACTGTTATTGTTCTTGAACAAGAGGAAGAGCTTGATTTGGTGATTGAGATAAGTAATAAGCTTTGCATTCGTCCCGTGATTGGCCTTCGCGCTAAGCTTAGGACAAAGCATGGTGGCCATTTTGGGTCTACTTCTGGTGAGAAAGGGAAATTTGGTTTAACAACGACTCAGATTTTGAAGGTTGTGAAAAAGCTTGAACAAGTTGGCATGCTTGATTGTCTCCAGTTGCTGCATTTCCACATTGGTTCTCAAATTCCTTCCACAACATTGCTCGCTGATGGTGTAGGCGAGGCTGCGCAGGTTTATTGCGAATTGGTTCGTTTGGGTGCGCAAATGGGAGTTATTGATATTGGTGGTGGTTTAGGCATTGACTACGATGGTTCTAAATCGGTTGAGTCTGATATCTCAGTTGGTTATACTCTTGAAGAGTATGCTGCTGCTGTTGTTGAGGCTGTGCAGCGTGTTTGCCATAGCAAATTGGTTAAGCACCCGGTGATTTGTAGTGAGAGTGGCAGGGCTATTGTTTCTCACCATTCCGTGTTGATTTTTGAGGCCATGGCTGCAAGCGTGTGTGCAGCTCCTGCTTTGTCAACCCTCGGGTTGCAGTATTTGGTTGATGGGTTATCGGAGGAAGCACGTGCTGATTATCACAACTTATCTGCTGCAACAATGAGGGGAGATTATGAAACATGTTTGCTATACATTGATCAATTCAAGCAAAGATGTGTTGAACAGTTCAAGCAAGGAACTTTAGGAATGAAACAGCTTGCTGCGGTTGATGGTTTGTGTGATCTTATTGGTAACGCAATTGGGGCAAATGACCCAGTTAGAACTTACGATGTGAATCTTTCGGTTTTCACATCCATTCCTGATTTCTGGGGGATTGAGCAGATGTTTCCAATTCTCCCTATTCATCGTCTGGATGAGAAGCCAACAGTGAGGGGAATTTTGTCTGATTTGACTTGTGACAGTGATGGGAAGATCGACAAGTTCATCGGTGGTGAATCAAGCTTGCCGCTGCATGAATTGGAAGGAGGCCATGGTAGTGGCCAGTATTATTTGGGAATGTTCTTGGGTGGGGCTTATCAGGAGGCGCTTGGTGGTGTCCACAACCTGTTTGGTGGCCCAAGTGTTGTTCGGGTGTTACAGAGTGATGGCCCTCATGGCTTTGCTGTGACACGCGCAGCGCCTGGGCCTTCCTGTGGAGATGTCCTCCGAGTGGTGCAGCACGAGCCAGAGCTCATGTTTGAGACTCTCAAGCACCGCGCCAAAAAGTTTGGCGACGATGATGGCAACAGTATAGCAGCATTGGCAACTTACCTCGCCCGATCATTCAACAACATGCCTTATCTGGTTGCATCACCATGTGACATGAATACCATGAATAATCGTAGTAAAAATAATTACGGCTTTTACTATTGCTCCAGTGATGATGATTACAATGCTGATATAGCAGATTCTGTTTGTGGTGTTGAAGAAGAGGAAAGGTGGTCTTTTTGCAGTGCTTGA	2130	0.4573	MPALPSCVDPATLLTPAGHISIPIPVTFSDDWSPSLSSTLYKVDAWGAPYFAVNSSSGNITVRPHGSDTMIHQEIDLLKIVKKASDSKSLGGLGLQLPLIVRFPDVLKNRLESLQSAFNYAIESRGYESHYQGVYPVKCNQDRFIVEDIVSFGSSFRFGLEAGSKPELLLAMNSLCKGSPEAFLVCNGFKDSEYITLALLARKLALNTVIVLEQEEELDLVIEISNKLCIRPVIGLRAKLRTKHGGHFGSTSGEKGKFGLTTTQILKVVKKLEQVGMLDCLQLLHFHIGSQIPSTTLLADGVGEAAQVYCELVRLGAQMGVIDIGGGLGIDYDGSKSVESDISVGYTLEEYAAAVVEAVQRVCHSKLVKHPVICSESGRAIVSHHSVLIFEAMAASVCAAPALSTLGLQYLVDGLSEEARADYHNLSAATMRGDYETCLLYIDQFKQRCVEQFKQGTLGMKQLAAVDGLCDLIGNAIGANDPVRTYDVNLSVFTSIPDFWGIEQMFPILPIHRLDEKPTVRGILSDLTCDSDGKIDKFIGGESSLPLHELEGGHGSGQYYLGMFLGGAYQEALGGVHNLFGGPSVVRVLQSDGPHGFAVTRAAPGPSCGDVLRVVQHEPELMFETLKHRAKKFGDDDGNSIAALATYLARSFNNMPYLVASPCDMNTMNNRSKNNYGFYYCSSDDDYNADIADSVCGVEEEERWSFCSA*	710

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan13g0198	709	Gene3D	Alanine racemase	104	385	IPR029066	-
Lan13g0198	709	CDD	PLPDE_III_ADC	100	588	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PANTHER	ARGININE DECARBOXYLASE	25	709	-	-
Lan13g0198	709	SUPERFAMILY	Alanine racemase C-terminal domain-like	480	591	IPR009006	GO:0003824
Lan13g0198	709	TIGRFAM	speA: arginine decarboxylase	32	658	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PANTHER	ARGININE DECARBOXYLASE	25	709	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	130	383	IPR022644	GO:0003824
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	103	118	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	127	141	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	185	200	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	211	232	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	235	257	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	363	380	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	489	510	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	514	539	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	PRINTS	Arginine decarboxylase signature	567	588	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	41	589	IPR009006	GO:0003824
Lan13g0198	709	PIRSF	ARGDC	19	659	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lan13g0198	709	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	316	329	IPR022657	-
Lan13g0198	709	SUPERFAMILY	PLP-binding barrel	103	385	IPR029066	-
Lan13g0198	709	Gene3D	-	402	482	-	-
Lan13g0198	709	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	135	153	IPR022653	-
Lan13g0198	709	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	135	153	IPR000183	GO:0003824
Lan13g0198	709	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	159	171	IPR000183	GO:0003824
Lan13g0198	709	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	278	291	IPR000183	GO:0003824
Lan13g0198	709	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	373	392	IPR000183	GO:0003824
Lan13g0198	709	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	567	580	IPR000183	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan13g0198	Lan-Chr13	1240030	1242788	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan13g0198	K01583		-	qsu:111996615	1060.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan13g0198	13	1240030	1242788	Lan13g0198	13	1240030	1242788	ECH