Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0188 ATGGAAGTTATTCTCTGCACCAACCATCTCAGACTCACTTCTTCCTTCTCTTTCTCCTTCTCTTCTTCTTTCCCTTCCACTCACTTCCTCGGTTCTACCCACACTCTCAAGCCCAAGCCCAAGCCCAAGCCCAAGCTCCTTCGTTCTTCTAACAACTTCCACCTTCTCCGTTTCCATTCCCCGCGCTTTCTCTTCAAGCCCTCTTCTTTTCATTCTCACCCAACTATCATTTTCTTCATCGTTGTTACTATTTCTGCAGTTTCATTCATTCACCACACTCTTACAACCAAAAACAAAGATAAAACTACTCAGCTACACCCACATCCTCATTTTGCGTTATCACCACAATTTCAAAGGGATAATTCACTCACTGAACAACAAGATGAGATAAAGGACATTCCTTTTTTGAATTCTTCTTCTTCTTCATCATCATCTTCTTCTGCTGCTGTTGTTGCTGTTAATGATGATGATGATTCTAATGTATTCACAGTTACTGATACTTTTTTGCCACTGCCTTTCAATTCCACTTCACTCTCTGAGCCCTTCACTCTTATTCAATTTGAGGAGAATGCTGCTTCTTCTGTTACCGAAAACGATGCACTCGATGACGAACACAGTGCAGAGAAAATTGAATTTGGTTCTGTCAGCAATGGTTTTCTTTTAGGCGAATCGGTTAGGGAAGATCTGTACATGTTTTATGAGGCTAATAAGAAGCCTGCAAATGGAACCATCTCATCACCTTTATCTCCTAATGCTTCTTTTGTCAATGGAAATGGGTTTCCCTCAGAAATTGGAAATGCCACTCTAAAAGGTGAAGAGCATGTTGAAGGAGTGGTACCGATTTCCAATCATATAGGAGGCTACCCTGCACAAGGTGGAAGTAATAACTTGAGGAATGGCAGCAGATATCTAAGAAACAGGGAAAAAAACTATCTGGATCATAATAGTAGCAAAGTTTTGCCTCAGAATGGCCATTCAATCAGGGTGCAAGCTCATCAGAAAAATGATCGAACCAAGGTGTATGATGATCAGAAAAATGATATTTCAGAGTATCTAAGCAAATATAATAATTTGCTAAAAGTTGGGAGGTTACGTGAAAGCGTAGAATTGCTTAAAGATACAGAAAAAAAGGGTTTATTAGATATGACTAAGGTTTATCATGCAAAGTTTTTCAACACTTGCAAGAGACAAAAGGCAGTTAAAGAAGCTTTTGATTACATTAGGCTTATCCCAAATCCAACATTGAGTACATTTAATATGCTCTTGTCAGTGTGTACAAGCTCCCAAGACTCAGAGCGGGCTTTCCAAGTTTTGCAACTTCTTAAGGAGGCTCGACTAGAACCTGATTGCCAACTTTATACCACTTTGATATCAACTTGTGCTAAGAGTGGGAAAGTTGATCAAATGTTTGAAGTTTTCCACAAGATGGTTAATTCTGGAGTGGAACCTAACGTTCTTACCTATGGGGCTCTTATTGATGGTTGTGCTAGAGTTGGGCAAGTAGCTAAGGCATTTGGTGTTTATGGGATAATGAGGTCCAAGAACGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATTGCCGCATGTGCCCAGTCAGGAGCAGTGGATCGTGCTTTCGATGTGTTGGCAGAAATGGCAGCAGAAACACAGCCAATTGACCCAGATCACATAACTTTTGGTGCTTTGATGAAAGCATGTTCAAAAGCTGGTCAGGTTCAACGAGCACAAGATGTGTATAAGATGATACAAAAATATAACGTAAAGGGATCCCCAGAACTTTACACTATTGCCATTAATTCTTGCAGCCAAACGGGAGATTGGGAATTAGCACAGAGTGTATACAATGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTCTGAGTGCACTAATCGATGTTGCTGGGCATGCTAAAAAGCTGGATGCTGCATTTGAAGTCCTACAAGAAGCCCGTAAAGGAGGAATACACATTGGAATAATGTCATATAGCTCATTGATGGGTGCATGTAGCAATACAAGAAATTGGCAGAAAGCATTGGAGCTGTACGATTATATTAAGTCTCTTAAATTGGTGCCAACAGTTTCAACAGTAAATGCTTTGCTCACTGCACTTTGTGACGGAGATCAATTTCAGAGGGCTTTGGAGATTTTATCTGAAATGAAAGGGTTAGGATTGCGCCCAAACAGTATCACATACTCATTACTTATAGTGGCAAGTGAGAAAAATGATGATATGGAAGCGGCTCAAATGCTCCTTTCTCAAGCCAAAAAGGATGGTGCTTCCCCTAATCTCGTCATGTGTCGATGCTTGATTGGAATGTGCCGGCGAAGATTTGAGAAGGCTTGTTTTGTTGGTGAACCAGTTTTATCTTTTGATTCTGGACGGCCACAAGTGGATAGTAAATGGACATCACTGGCCTTACTGGTGTATCGTGAAACAATTGGAGCTGGTGAGAAGCCTACTAGTGAAATATTGTCACAAATGCTGGGATGTTTGCAATTCCCCTGCGAAGAATCTATTAAAAACAGACTCGTTGAGAATCTGGGAGTAAGTGCTGAAACCTCAGAAAACTCAAATCTCTGTTCATTAATGGATGGATTTGGTGTATATGATTCTCGTGCTTTGTCAATACTTGAGGAAGCTGCGTCCTATGGAGTTGTTCCATCTGTATCATTTAAAGTGAGCCCTATCGTCATGGATGCTAAAGAAATGCATCCTTTCATTGCTGAGGTATACCTCCTAAGCGTTTTGAAAGGTCTCAAGCATAGACTAGCAGCAGGTGCAAGATTACCGAATACAATCATCTTATTGCCTATAGAGAAAACAGGCGTTTTGCTTCCCAAGGGGAAAAAGATTATTAACCTTTCAGGAAGAGTTGGCCAAACAATTGGAGCATTATTGAGGAGGCTTCAGATTCCTTACAAGGGTAATGAATCATCTGGGAAGCTTAGAATTAATGGTCTAGCTCTGAAAATATGGTTCCAACCAAAACTTGCATCTCCATTCAGCGGAAAGCCAGGTGACTGGAGCTCATCCCAATCGCGATTAGGCAAAAGTATTAGCCATCAGCAGCGTAACATTCGAACTGGCAATCTATCTTTGGATTAA 3117 0.409 MEVILCTNHLRLTSSFSFSFSSSFPSTHFLGSTHTLKPKPKPKPKLLRSSNNFHLLRFHSPRFLFKPSSFHSHPTIIFFIVVTISAVSFIHHTLTTKNKDKTTQLHPHPHFALSPQFQRDNSLTEQQDEIKDIPFLNSSSSSSSSSSAAVVAVNDDDDSNVFTVTDTFLPLPFNSTSLSEPFTLIQFEENAASSVTENDALDDEHSAEKIEFGSVSNGFLLGESVREDLYMFYEANKKPANGTISSPLSPNASFVNGNGFPSEIGNATLKGEEHVEGVVPISNHIGGYPAQGGSNNLRNGSRYLRNREKNYLDHNSSKVLPQNGHSIRVQAHQKNDRTKVYDDQKNDISEYLSKYNNLLKVGRLRESVELLKDTEKKGLLDMTKVYHAKFFNTCKRQKAVKEAFDYIRLIPNPTLSTFNMLLSVCTSSQDSERAFQVLQLLKEARLEPDCQLYTTLISTCAKSGKVDQMFEVFHKMVNSGVEPNVLTYGALIDGCARVGQVAKAFGVYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHITFGALMKACSKAGQVQRAQDVYKMIQKYNVKGSPELYTIAINSCSQTGDWELAQSVYNDMTQKGVLPDEMFLSALIDVAGHAKKLDAAFEVLQEARKGGIHIGIMSYSSLMGACSNTRNWQKALELYDYIKSLKLVPTVSTVNALLTALCDGDQFQRALEILSEMKGLGLRPNSITYSLLIVASEKNDDMEAAQMLLSQAKKDGASPNLVMCRCLIGMCRRRFEKACFVGEPVLSFDSGRPQVDSKWTSLALLVYRETIGAGEKPTSEILSQMLGCLQFPCEESIKNRLVENLGVSAETSENSNLCSLMDGFGVYDSRALSILEEAASYGVVPSVSFKVSPIVMDAKEMHPFIAEVYLLSVLKGLKHRLAAGARLPNTIILLPIEKTGVLLPKGKKIINLSGRVGQTIGALLRRLQIPYKGNESSGKLRINGLALKIWFQPKLASPFSGKPGDWSSSQSRLGKSISHQQRNIRTGNLSLD* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Lan13g0188 1038 MobiDBLite consensus disorder prediction 1008 1038 - -
Lan13g0188 1038 Coils Coil 741 761 - -
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 625 IPR002885 -
Lan13g0188 1038 MobiDBLite consensus disorder prediction 1005 1038 - -
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 696 730 IPR002885 -
Lan13g0188 1038 Gene3D Tetratricopeptide repeat domain 657 836 IPR011990 GO:0005515
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Lan13g0188 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Lan13g0188 1038 Gene3D Tetratricopeptide repeat domain 499 656 IPR011990 GO:0005515
Lan13g0188 1038 TIGRFAM PPR: pentatricopeptide repeat domain 664 696 IPR002885 -
Lan13g0188 1038 TIGRFAM PPR: pentatricopeptide repeat domain 699 731 IPR002885 -
Lan13g0188 1038 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Lan13g0188 1038 TIGRFAM PPR: pentatricopeptide repeat domain 487 519 IPR002885 -
Lan13g0188 1038 TIGRFAM PPR: pentatricopeptide repeat domain 453 485 IPR002885 -
Lan13g0188 1038 TIGRFAM PPR: pentatricopeptide repeat domain 594 627 IPR002885 -
Lan13g0188 1038 Pfam Pentatricopeptide repeat domain 719 777 IPR002885 -
Lan13g0188 1038 Gene3D Tetratricopeptide repeat domain 350 497 IPR011990 GO:0005515
Lan13g0188 1038 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 302 1038 - -
Lan13g0188 1038 Pfam Pentacotripeptide-repeat region of PRORP 564 706 IPR033443 -
Lan13g0188 1038 Pfam Pentacotripeptide-repeat region of PRORP 416 549 IPR033443 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0188 360 780 Glycosyltransferase AT1G05670 24.709 3.40e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0188 - - gmx:100814164 1384.01