Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0181 ATGAGTGCCTCTAGGTTCATTAAGTGTGTCACCGTTGGTGATGGTGCTGTTGGAAAAACTTGTATGCTTATCTCCTACACCAGCAACACTTTCCCGACGGACTATGTTCCAACTGTCTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGGAGTACCGTGAATCTGGGTTTGTGGGATACTGCTGGCCAAGAAGATTACAATAGACTAAGACCTTTAAGCTATCGTGGAGCAGATGTATTCCTTCTTGCATTCTCTCTCATAAGTCGGGCTAGCTATGAAAATATTGCTAAAAAATGGATTCCCGAATTGAGGCATTATGCTCCAGGTGTTCCAATTATTCTTGTTGGAACAAAACTTGATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTGGTGCAGTCCCTATCACCACAGCGCAGGGTGAGGAACTGAGAAAACTTATTGGTGCTCCAGTTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTTAAAGGTGTTTTTGATGCTGCCATCAAAGTAGTTCTCCAGCCCCCAAAGCAGAAGAAAAAGAAGAGAAAGGGGCAAAAGGCCTGCTCCATTTTGTGA 594 0.4327 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKGVFDAAIKVVLQPPKQKKKKRKGQKACSIL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0181 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Lan13g0181 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Lan13g0181 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Lan13g0181 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Lan13g0181 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Lan13g0181 197 SMART ras_sub_4 4 180 - -
Lan13g0181 197 CDD Rop_like 6 178 - -
Lan13g0181 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Lan13g0181 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Lan13g0181 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Lan13g0181 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Lan13g0181 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC3 1 197 - -
Lan13g0181 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Lan13g0181 197 SMART rab_sub_5 7 180 - -
Lan13g0181 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Lan13g0181 197 Gene3D - 5 192 IPR027417 -
Lan13g0181 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Lan13g0181 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0181 Lan-Chr13 1123455 1126874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0181 7 180 EF-hand Containing Proteins AT5G27540 27.011 1.53e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0181 K04392 - gmx:100785464 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0181 13 1123455 1126874 Lan13g0181 13 1123455 1126874 ECH
Lan7g0114 7 661173 663620 Lan13g0181 13 1123455 1126874 LSH
Lan8g1827 8 24700090 24702570 Lan13g0181 13 1123455 1126874 LSH