Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0172 ATGGATCTCTTCCTCCACTCTTATTTCACACTCATTACACTCCTACTCTTCACTCCCACTGGTGTTATAGCTGCTACCTTCACATTTGTTAACAGATGCGACTACACCGTTTGGCCAGGTATTCTCGCTAATGCCGGTAGCCCACCTCTCGACTCCACCGGTTTCGAGCTCCCCAAACTCACTTCCCGCACTTTCCAACCTCCAACCGCTTGGTCCGGTCGTTTCTGGGCTCGAACCGGTTGCAACTTCGACGGATCCGGTTCCGGTTCATGTCTCACCGGTGACTGCGGTTCCGGCCAACAAGAATGCAACGGTGCCGGAGCAGCTCCTCCGGTAACTCTAGCTGAGTTCACTCTTGGCACAATAGGTCAAGACTTCTACGATGTTAGCCTCGTCGACGGTTACAATCTTCCGATGATTGTTGAAGGGAGTGGCGGGTCCGGTTCGTGTGCTTCAACCGGCTGCACTTCGGATCTGAACCTCCAGTGTCCAGCGGAGTTGAAAGTAGAGGGTGGTGGAGCGTGTAAGAGCGCGTGTGAAGCGTTTGGTAGCCCTGAGTATTGTTGCAGTGGCGCGTATGGTTCACCGGGGACATGTAGACCCTCAATCTATTCGCAAATGTTTAAGGCTGCATGTCCCAAATCGTATAGCTACGCATACGATGATGCTACGAGTACATTTACATGCAGTGGTGCTGATTATACCATTACTTTTTGTCCATCTTCTCCAAGTCAGAAATCATCAAGAGATCCAAACCCAATGACCCAAACAACACCACAAGGGTCAGGGATAGGAGTAGTAGGCACAGGAACAGAAACAGGAACAGGAGGATACACTGGCAGTGTAGGTACGGATACGGGTGTTGGGTATGCGGGTATTGGAACAGGGTCGGGTACAGGATCCGGAGATGCCATGCTAGCAGATGGGTCATACCTAGCTGGTTTGGCAATGGGAGATTCCTCTAGGACTATTATTACACTTTCTTCTTCATTCATTTACTTTTCTAGTCTTTTAATTATTCTCATCTTCATTTAG 1035 0.4966 MDLFLHSYFTLITLLLFTPTGVIAATFTFVNRCDYTVWPGILANAGSPPLDSTGFELPKLTSRTFQPPTAWSGRFWARTGCNFDGSGSGSCLTGDCGSGQQECNGAGAAPPVTLAEFTLGTIGQDFYDVSLVDGYNLPMIVEGSGGSGSCASTGCTSDLNLQCPAELKVEGGGACKSACEAFGSPEYCCSGAYGSPGTCRPSIYSQMFKAACPKSYSYAYDDATSTFTCSGADYTITFCPSSPSQKSSRDPNPMTQTTPQGSGIGVVGTGTETGTGGYTGSVGTDTGVGYAGIGTGSGTGSGDAMLADGSYLAGLAMGDSSRTIITLSSSFIYFSSLLIILIFI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0172 344 Pfam Thaumatin family 31 240 IPR001938 -
Lan13g0172 344 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lan13g0172 344 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lan13g0172 344 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Lan13g0172 344 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lan13g0172 344 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Lan13g0172 344 PANTHER OS03G0233200 PROTEIN 15 265 IPR001938 -
Lan13g0172 344 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 15 265 - -
Lan13g0172 344 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Lan13g0172 344 SMART tha2 27 240 IPR001938 -
Lan13g0172 344 Gene3D Thaumatin 25 240 IPR037176 -
Lan13g0172 344 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lan13g0172 344 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Lan13g0172 344 CDD TLP-PA 26 239 - -
Lan13g0172 344 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0172 Lan-Chr13 1038217 1039938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0172 9 248 Receptor kinase-like Gene Family AT5G38280 49.206 1.60e-77 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0172 - - ahf:112789067 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0172 13 1038217 1039938 Lan13g0172 13 1038217 1039938 ECH