Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0171 ATGGGTCGCGTCCTTCTCTTTCTCATTATTCTCATCTTTGTTGCATTATCTTTCCTCTCAGAGGTACAATCAACGTCGTTCAAGATCGTGAACAAGTGCCGCCACACGATATGGCCGGGACTACTCTCCGGCGCCACTTCACCGCCGCTACCCACCACCGGTTTCGCTCTTAACAGCGGCAAGTCCAAGACCATCAAAATCCCCAAATCTTGGTCGGGTCGGCTATGGGCTCGGACCCTCTGCGGCAAAGGCTCCGACGGAAAATTCTCATGCGTAACCGCCGATTGTGGCTCCGGCAAGGTAGAGTGTGCCGGTGGAGGTGCCAAACCGCCGGCAACGCTGGCGGAGCTCACACTTAACGGCGCCGACGGGTTGGACTTCTACGACGTGAGTTTGGTTGACGGTTACAACCTTCCGATGCTGATCGTGGCGAAGGGAGGTACCAGGGGTGGGTGCAGCCCGACGGGGTGCTTGGTGGAGCTCAACGGCGCGTGCCCGAAGGACCTCAGGGTGGTGCGTGGGAATGGGAGTAGAGAAAGTGTCGCGTGCAGGAGCGCGTGTGAGGCTTTTGGTGATCCAAGGTATTGTTGTAGTGAAGCTTACTCAACGCCTGACACGTGTGGTCCTTCTGTTTACTCGCAGTTCTTCAAGTTTGCTTGCCCACGCGCATATAGCTACGCGTATGATGACAAGACTAGCACATACACGTGTGCCTCCGCTAACTACTTGATCATATTTTGCCCTTTACCCTATACCAGCGAAAAACTGCTGGAAGTGCGGAAAGATGGTGCACCGCTTCCTCTCGTAAACAAAACTATGATGTATTTATCGCATTCAGGTGGTTCTTCATCAACAGGCAGATAG 864 0.5405 MGRVLLFLIILIFVALSFLSEVQSTSFKIVNKCRHTIWPGLLSGATSPPLPTTGFALNSGKSKTIKIPKSWSGRLWARTLCGKGSDGKFSCVTADCGSGKVECAGGGAKPPATLAELTLNGADGLDFYDVSLVDGYNLPMLIVAKGGTRGGCSPTGCLVELNGACPKDLRVVRGNGSRESVACRSACEAFGDPRYCCSEAYSTPDTCGPSVYSQFFKFACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSEKLLEVRKDGAPLPLVNKTMMYLSHSGGSSSTGR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0171 287 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Lan13g0171 287 SMART tha2 27 248 IPR001938 -
Lan13g0171 287 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Lan13g0171 287 CDD TLP-PA 26 247 - -
Lan13g0171 287 Pfam Thaumatin family 31 248 IPR001938 -
Lan13g0171 287 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Lan13g0171 287 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lan13g0171 287 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Lan13g0171 287 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lan13g0171 287 PANTHER OS03G0233200 PROTEIN 6 259 IPR001938 -
Lan13g0171 287 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lan13g0171 287 PIRSF PR5 1 278 IPR001938 -
Lan13g0171 287 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 6 259 - -
Lan13g0171 287 Gene3D Thaumatin 25 248 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0171 Lan-Chr13 1032405 1035303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0171 5 248 Receptor kinase-like Gene Family AT5G38280 50.000 1.19e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0171 - - ccaj:109798931 506.523