Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0098 ATGGGTCAAACTTTTCGAAAGCTCTTCGATACCTTCTTCGGCAATACCGAGATGAGGGTTGTGATGCTTGGTCTTGATGCTGCTGGAAAAACTACTATACTCTACAAGCTTCATATTGGAGAAGTTTTATCTACTGTTCCTACCATTGGTTTCAATGTGGAGAAGGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGTCAAGAGAAATTAAGGACACTTTGGAGGCACTATTTTAACAACACAGATGGTCTGATATATGTTGTTGATAGCCTGGACCGTGAGAGACTTGGAAAAGCAAAGCAGGAATTTCAGAATATCATAAGTGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGAGAGGAGCCATGACACCAAGGGAAGTATGTGAAGGGTTAGGTCTCTTTGATCTCAAGAATAGAAAATGGCACATACAAGCGACTTGTGCGCTTAAGGGAGATGGCCTATACGAGGGCTTGGACTGGTTGTCCACAACTCTGAAGGAGAGAAATGCTGCTGGATACTCTTCCATAGCTCTAGGAACCTCATCCTTCTAA 588 0.4252 MGQTFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERLGKAKQEFQNIISDPFMLNSVILVFANKQDLRGAMTPREVCEGLGLFDLKNRKWHIQATCALKGDGLYEGLDWLSTTLKERNAAGYSSIALGTSSF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0098 195 Gene3D - 3 187 IPR027417 -
Lan13g0098 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Lan13g0098 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 188 IPR024156 GO:0005525
Lan13g0098 195 TIGRFAM small_GTP: small GTP-binding protein domain 16 137 IPR005225 GO:0005525
Lan13g0098 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 181 IPR027417 -
Lan13g0098 195 Pfam ADP-ribosylation factor family 6 176 IPR006689 GO:0003924|GO:0005525
Lan13g0098 195 SMART arf_sub_2 1 181 - -
Lan13g0098 195 PANTHER ADP-RIBOSYLATION FACTOR B1C 1 188 - -
Lan13g0098 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lan13g0098 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lan13g0098 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lan13g0098 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Lan13g0098 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Lan13g0098 195 SMART sar_sub_1 9 177 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0098 Lan-Chr13 582049 586218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0098 K07937 - gmx:100499903 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0098 13 582049 586218 Lan13g0098 13 582049 586218 ECH
Lan7g0049 7 237600 239623 Lan13g0098 13 582049 586218 LSH