LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan13g0090	ATGGCATCAAAATCATTCAATCCAAGCAGATCAAATCTGTCACAAGCTTCTGATGCATCTGAGAACCAGAAGCCTCCTTTACCCCCAACTGTAAGATTTGGTCGAAGAACTTCCTCCGGTCGTTACATCAGTTACTCCAGAGATAGCCTTGATAGTGAACTGGAGAATAATGATTTTCTGAATTATACAGTGCATATGCCACAAACCCCTGATAACCAACCAATGGATCCATCAATCTCGCAGAAAGTTGAGGAGCAATATGTATCGAATTCGCTATTCACGGGTGGATTCAACAGTCTTACTAGAGCTCATCTAATGGATAAGGTGATAGAATCTGAAGCAAACCATCCGCAGATGGCTGGTGCAAAAGGGTCTTCATGTGAAGTTCTTGGTTGTGATGCTAAGGTGATGAGTGATGAACGCGGTGTGGATCTTCTTCCGTGTGAGTGTGATTTTAAGATATGTAGAGACTGCTATATTGACGCGGTGAAAACAGGAGGTGGAATATGCCCAGGGTGCAAGGAGTCATATAAGAACACAGAACTAGATGAAGTAGATGCAGATAATGGAAGACACCTTCCACTTCCTCTACCAAGTGGAGTCTCTAAAAGGGATAGGAGTTTGTCTGTGATGAAGCCAACCAAGTCTCTAATGAGAAGCCAAACCGGAGATTTTGATCACAACCGGTGGCTCTTTGAAACAAACGGTACCTATGGCTATGGCAATGCTATATGGCCAAAGGAAGGGAATTTTGCAAATGGAAAAGATGATGATGATTATGCTGAGCCAACTGAGTTTATGAACAGACCCTGGAGGCCACTTACACGCAAACTCAAGATACCTGCTGCTATTCTCAGTCCATATCGGCTTATCATTTTCATTCGTATTATTGTGTTGGTACTGTTCTTGTCATGGCGGGTCCAGAACAAAAATGTTGATGCAGTCTGGCTGTGGGGCATGTCTGTGGTTTGTGAGATATGGTTTGCTTTTTCATGGCTTTTGGATCAATTGCCGAAGCTATGCCCAGTGAACCGTTCCACCGATCTTACTGTTCTGAAGGAAAAATTTGAAACACCAAGTCCTGAAAATCCTACTGGAAAGTCTGATCTTCCAGGCATTGATGTCTTTGTCTCCACTGCTGATCCTGAGAAAGAACCACCTCTTGTTACTGCAAACACTATCCTCTCTATTTTAGCTGCTGATTATCCAGTTGAGAAGCTTGCTTGCTATGTTTCTGATGATGGAGGTGCACTTTTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTATGCTAATGTATGGATTCCATTCTGCCGTAAACATGACATAGAACCCAGAAATCCTGAATCATATTTCAGTTTAAAGAGAGATCCTTACAAAGGAAAAGTGAAACCAGATTTTGTTAAGGATCGTAGACGGGTGAAGCGTGAGTATGATGAGTTCAAAGTCAGGATCAATGGTCTCCCTGAATCTATCCGTCGCCGCTCGGATGCCTTTCATGCAAGAGAAGAAATCAAGGCCATGAAACTCGAGAGACAAAACAGGGAAGATGAACCGATTGAACCTGTTAAGATTGCAAAAGCAACATGGATGGCTGATGGAACTCATTGGCCGGGGACTTGGTTAAATCCTTCACCTGATCACTCTAAAGGTGACCATGCTGGTATAATCCAGGTGATGTTGAAACCTCCGAGTGATGAAACTCTTGTTGGAGGTGGTGATGAAAACAACCTCATTGACACGACTGATGTTGATATCCGCCTTCCCCTTCTTGTTTATGTTTCCAGAGAGAAGCGTACAGGCTATGATCACAACAAAAAAGCAGGTGCCATGAATGCCTTGGTTCGAGCCTCAGCTGTGATGTCTAATGGTCCATTTATACTCAATCTTGATTGTGATCACTACATCTACAACTCAAAGGCAATGAAGGAAGGTATGTGTTTTATGATGGATCGCGGAGGTGACCGCCTTTGCTATGTCCAATTCCCCCAGAGGTTTGAGGGGATTGATCCCTCGGATAGATATGCTAACCATAACACTGTCTTCTTTGATGTCAATATGAGAGCACTTGATGGACTTCAAGGGCCAGTCTATGTCGGAACTGGTTGTCTTTTTAGGAGGGTTGCCCTTTATGGTTTTGATCCCCCTCGCTCTAAAGAAAACCATTCAGGTTTCTGTACTTGCTGCTTTGGCCGTTCCAAGAAGAAGAATGCATCAATGGCAAACTCTCAGGAAGAGAACCGAGCATTAAGGATGGGTGATTCCGATGACGAAGAAATGAACCTGTCATTCTTCCCTAAGAAGTTTGGAAACTCAACTTTACTCATTGACTCAATACCAGTGGCAGAGTTCCAAGGTAGGCCACTTGCTGATCACCCTGCAGTGAAAAATGGACGCCCTCCTGGTGCTCTCACCACGCCGCGTGAGCTTCTCGATGCATCAACTGTGGCTGAGGCCATCAGTGTCATTTCATGTTGGTATGAGGACAAGACCGAGTGGGGACAGCGTGTTGGATGGATCTACGGATCAGTTACTGAGGATGTGGTCACCGGCTATAGAATGCACAATAGAGGATGGAAATCAGTTTACTGTGTGACCAAGCGTGACGCCTTTCGTGGAACTGCTCCTATCAATCTCACCGATAGGTTGCATCAGGTGCTTAGATGGGCTACTGGCTCGGTTGAAATATTCTTCTCTCGAAACAATGCTCTTCTAGCTAGCCCAAGAATGAAATTTCTTCAAAAAATTGCATACCTTAATGTTGGAATTTATCCATTCACTTCCATATTCCTTATCGTCTACTGCTTCCTCCCTGCACTTTCACTCATCTCTGGCCAGTTCATTGTTCAAAACCTCAATGTCACATTCCTTGTCTACCTCTTGACCTTCACGGTGACGTTGTGCATGCTGGCAGTGCTCGAAATCAAGTGGTCCGGGATCGAGCTAGAAGAATGGTGGAGAAATGAGCAATTTTGGTTAATTGGAGGGACTAGTGCCCATCTAGCTGCTGTGCTTCAAGGTTTGCTCAAAGTCATAGCAGGCATTGAAATCTCCTTCACCTTAACTTCAAAATCTGTTTCAGATGATGTAGATGATGAATTTGCCGATCTCTACGTCGTCAAATGGACATCACTTATGATACCACCAATCACAATTATGATGGTTAACTTGATAGCAATAGCGATTGGACTTAGCCGAACTATATACAGCACAATACCGCAATGGAGCCGTCTACTTGGTGGTGTTTTCTTCAGTTTTTGGGTGTTGACACATCTCTACCCTTTTGCAAAAGGTTTGATGGGAAGAAGGGGAAGAACACCAACCATTGTTTTTGTGTGGTCAGGCCTTATAGCAATCACAATATCACTCTTGTGGGTGGCAATAAATCCCCCTGCTGGTAATAACCAAATTGGTGGTTCCTTCCAGTTTCCATGA	3435	0.4405	MASKSFNPSRSNLSQASDASENQKPPLPPTVRFGRRTSSGRYISYSRDSLDSELENNDFLNYTVHMPQTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSLTRAHLMDKVIESEANHPQMAGAKGSSCEVLGCDAKVMSDERGVDLLPCECDFKICRDCYIDAVKTGGGICPGCKESYKNTELDEVDADNGRHLPLPLPSGVSKRDRSLSVMKPTKSLMRSQTGDFDHNRWLFETNGTYGYGNAIWPKEGNFANGKDDDDYAEPTEFMNRPWRPLTRKLKIPAAILSPYRLIIFIRIIVLVLFLSWRVQNKNVDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLTVLKEKFETPSPENPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASYANVWIPFCRKHDIEPRNPESYFSLKRDPYKGKVKPDFVKDRRRVKREYDEFKVRINGLPESIRRRSDAFHAREEIKAMKLERQNREDEPIEPVKIAKATWMADGTHWPGTWLNPSPDHSKGDHAGIIQVMLKPPSDETLVGGGDENNLIDTTDVDIRLPLLVYVSREKRTGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMKEGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKENHSGFCTCCFGRSKKKNASMANSQEENRALRMGDSDDEEMNLSFFPKKFGNSTLLIDSIPVAEFQGRPLADHPAVKNGRPPGALTTPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQKIAYLNVGIYPFTSIFLIVYCFLPALSLISGQFIVQNLNVTFLVYLLTFTVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSVSDDVDDEFADLYVVKWTSLMIPPITIMMVNLIAIAIGLSRTIYSTIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGNNQIGGSFQFP*	1145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan13g0090	1144	MobiDBLite	consensus disorder prediction	1	24	-	-
	Lan13g0090	1144	MobiDBLite	consensus disorder prediction	1	35	-	-
	Lan13g0090	1144	SUPERFAMILY	RING/U-box	112	181	-	-
	Lan13g0090	1144	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	34	1142	-	-
	Lan13g0090	1144	Pfam	Cellulose synthase	373	1135	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Lan13g0090	1144	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	110	192	IPR013083	-
	Lan13g0090	1144	PANTHER	CELLULOSE SYNTHASE-LIKE PROTEIN D3	34	1142	-	-
	Lan13g0090	1144	Pfam	RING/Ubox like zinc-binding domain	131	178	-	-
	Lan13g0090	1144	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	581	715	IPR029044	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan13g0090	Lan-Chr13	526306	531331	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan13g0090	1	1144	Glycosyltransferase	AT3G03050	81.944	0.0	1977

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan13g0090	K20924		-	gmx:100792604	2108.57

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan13g0090	13	526306	531331	Lan13g0090	13	526306	531331	ECH