Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0088 ATGACGACAAGATCGGTGAAAGTGAGCAACATCTCTTCAAGTGCAACTGAACAAGACTTGAAGGAATTTCTAACCTTTCCTGGAAAAATTGACTATATTGAATTGAAGAGTGATAATGGAAGTTCCCAAGTTGCATATGTTACCTTCAGTAATCCAGAGGGAGCTGAAACTGCTGTTCTTCTATCGGGAGCAGTGGTGGCTGGACAGCCTTTAACCATAGCAATGGCTCCAGAATATTCTCTGCCTGCATCTGTTGCATCTACACTGCCAACTGCAACAGAGACCAAAAATGCTGAAACTGGTGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACAAGCTTGCTAGCTAAGGGCTTTATTTTGGGTAAAGATGCATTAACACATGCTGAATCCTTTGATGAAAGGCACCATGTTACTTCCACAGCAACAGCAAAAGTTGTTTCTCTAGACCAAAAGGTTGGTCTCACTGAAAAAATCAGTGCTGGTACAACTTTGGTGAATGAGAAAGTAAAAGAAATGGATGAGAAATTTCAAGTATCAGAGAAGACTAAGATTGCAATTTCAGCCGCCGAGCAGACGGTAAGTAATGCCGGATCAGCCATCATGAAGAACCGTTATATCTTGACCGGGGCGACATGGGTCACCGGTGCATATAATAAGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTAGCACATGATAATAATAATAATCAAGGAAAGACAGAAGAACAAGGACATGTCCAAACCAACATCATTGAACCTCAAAAGACCACCACACCTGATCAACCCTCCAAACCTGAATCTCAACAGAACACCAAACCTGACAAGCCTTCCAATCCTGAAACAACAACACAAGGTCTCATCCTTTGA 894 0.4239 MTTRSVKVSNISSSATEQDLKEFLTFPGKIDYIELKSDNGSSQVAYVTFSNPEGAETAVLLSGAVVAGQPLTIAMAPEYSLPASVASTLPTATETKNAETGESGLRKAEDVVTSLLAKGFILGKDALTHAESFDERHHVTSTATAKVVSLDQKVGLTEKISAGTTLVNEKVKEMDEKFQVSEKTKIAISAAEQTVSNAGSAIMKNRYILTGATWVTGAYNKVAKAAEEVGQKTKEKVLAHDNNNNQGKTEEQGHVQTNIIEPQKTTTPDQPSKPESQQNTKPDKPSNPETTTQGLIL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0088 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Lan13g0088 297 SUPERFAMILY RNA-binding domain, RBD 3 77 IPR035979 GO:0003676
Lan13g0088 297 Gene3D - 1 80 IPR012677 -
Lan13g0088 297 MobiDBLite consensus disorder prediction 242 297 - -
Lan13g0088 297 MobiDBLite consensus disorder prediction 240 297 - -
Lan13g0088 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 71 IPR000504 GO:0003723
Lan13g0088 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 258 - -
Lan13g0088 297 PANTHER BINDING PARTNER OF ACD11 1 1 258 - -
Lan13g0088 297 SMART rrm1_1 5 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0088 Lan-Chr13 518355 520696 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0088 - - gmx:100784398 421.009