Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0903 ATGGCGAAGAACGAGGAGCTTCCGATCCCAATTTACAACAACCTGGAACCTGTGTATGGCGATGGTTCTCAATTCGAAGAAGCTCAGCTTCGTTTTGATAATTTGAAATCAAAGTTTCTCCAAGTCTTTGGTCACTCTCCTCAACTCTTCGCTCGTTCCCCTGGGAGAGTGAACTTGATTGGAGAGCACATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGTCAAGATACAATTATTGCGATTCGCAGAAATGAAACCGAAAAGGTTCTCAGAATTGCTAACGTAAACGAAAAATATTCCATGTGTACTTATCCAGCTGATCCTAACCAGGAACTCGACTTGAAGAATCACAAATGGGGCCATTATTTTATTTGTGGGTATAAAGGTTTCTATGACTACGCAAAATTAAAAGGAGTGGATGTGGGTCAACCAGTTGGACTTGATATTGTTATTGATGGAATAGTGCCAACAGGTTCCGGACTATCAAGTTCTGCAGCATTTGTTTGTTCTTCCACAATTGCTATTATGGCTGCATTTGATGTGAACTTTCCAAAGAAAGAAATTGCACAAGTTGCATGTGATTGTGAACAACACGTCGGGACACAATCTGGTGGGATGGATCAGGCAATCTCTATCATGGCCAAGACTGGATTTGCAGAGCTGATTGATTTCAACCCGATCCGTGCAACAGATGTACAACTTCCTACTGGTGGAATTTTTGTGATAGCTCACTCTCTGGCAGAGTCTCAGAAGGCTGTTACCGCTGCCACAAATTATAATAATAGGGTTGTTGAATGCCGTCTGGCTTCTATTGTGCTCGGTATAAAGCTAGGAATGAAACCTGAAGAGGCAATATCAAAAGTGAACACGCTGTCTGATGTTGAAGGTTTATGTATATCATTCGCTGGTACCCATAACTCATCCGATCCTGTTGTTGCTGTCAAGGAATGTTTGAAGGAAGAACCGTATACAGCTGAAGAGATTGAAAAAATTACTGGGGAAAAGCTGACTTCATTTTTGGGCAATAATGCAGCTTATGTGGATGTCATAAAAGCTGCAAAGCAATACAAGTTACATCAGAGAGCTGCTCATGTTTATTCAGAAGCCAAAAGAGTACATGCCTTCAAGGATGTTGTTGCATCATCAAATCTGAATGATGAGGAGATGTTAAAAAAGCTTGGTGATCTTATGAATGAGAGTCATCATAGTTGCAGTGTTTTATATGAATGCAGTTGTCCGGAGTTGGAAGAACTCGTAAGAAGTTGTCGTGACAATGGTGCTCTTGGGGCAAGGCTTACCGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTGGTGAAGGAGAACATAGTCCCACAGTTTATCCTTAATTTGAAGGAAAGTTACTATCAGTCTAGGATAGACAAGGGCGTTATCAAGAAGAATGACCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCTGCCATCTTCAAGTTCTAG 1494 0.4177 MAKNEELPIPIYNNLEPVYGDGSQFEEAQLRFDNLKSKFLQVFGHSPQLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIIAIRRNETEKVLRIANVNEKYSMCTYPADPNQELDLKNHKWGHYFICGYKGFYDYAKLKGVDVGQPVGLDIVIDGIVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEIAQVACDCEQHVGTQSGGMDQAISIMAKTGFAELIDFNPIRATDVQLPTGGIFVIAHSLAESQKAVTAATNYNNRVVECRLASIVLGIKLGMKPEEAISKVNTLSDVEGLCISFAGTHNSSDPVVAVKECLKEEPYTAEEIEKITGEKLTSFLGNNAAYVDVIKAAKQYKLHQRAAHVYSEAKRVHAFKDVVASSNLNDEEMLKKLGDLMNESHHSCSVLYECSCPELEELVRSCRDNGALGARLTGAGWGGCAVALVKENIVPQFILNLKESYYQSRIDKGVIKKNDLGLYVFASKPSSGAAIFKF* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0903 497 Gene3D - 236 466 - -
Lan12g0903 497 PANTHER MEVALONATE KINASE/GALACTOKINASE 1 496 - -
Lan12g0903 497 Gene3D - 261 412 - -
Lan12g0903 497 Gene3D - 37 235 IPR014721 -
Lan12g0903 497 SUPERFAMILY Ribosomal protein S5 domain 2-like 26 239 IPR020568 -
Lan12g0903 497 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Lan12g0903 497 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
Lan12g0903 497 Pfam GHMP kinases N terminal domain 151 216 IPR006204 GO:0005524
Lan12g0903 497 Pfam GHMP kinases C terminal 393 465 IPR013750 -
Lan12g0903 497 PIRSF Galactokinase 23 497 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Lan12g0903 497 PANTHER BNAA01G32760D PROTEIN 1 496 - -
Lan12g0903 497 TIGRFAM gal_kin: galactokinase 34 466 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lan12g0903 497 SUPERFAMILY GHMP Kinase, C-terminal domain 242 473 IPR036554 -
Lan12g0903 497 ProSitePatterns GHMP kinases putative ATP-binding domain. 158 169 IPR006203 GO:0005524
Lan12g0903 497 PRINTS Mevalonate kinase family signature 53 77 - -
Lan12g0903 497 PRINTS Mevalonate kinase family signature 156 178 - -
Lan12g0903 497 PRINTS Mevalonate kinase family signature 198 217 - -
Lan12g0903 497 PRINTS Mevalonate kinase family signature 432 449 - -
Lan12g0903 497 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lan12g0903 497 PRINTS Galactokinase signature 149 167 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lan12g0903 497 PRINTS Galactokinase signature 363 377 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0903 Lan-Chr12 16033496 16038134 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0903 K18674 - gmx:100796793 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0903 12 16033496 16038134 Lan12g0903 12 16033496 16038134 ECH