Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0888 ATGTTTCTATTCGATTGGTTCTATGGCATTCTCGCTTCTCTAGGTCTTTGGCAAAAAGAAGCTAAGATCCTTTTCCTTGGTCTCGATAATGCCGGAAAGACCACCCTTCTTCACATGCTCAAAGACGAGAGATTAGTTCAACACCAGCCAACCCAACACCCAACATCAGAGGAATTGAGCATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGTGGTCATCAAGTTGCGCGTAGAGTCTGGAAGGATTATTATGCTAAGGTGGATGCTGTGGTTTACCTGGTTGATTCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAGGAGCTTGATGCCTTGCTTTCAGATGAATCACTGGCGACTGTTCCATTTCTCGTGCTAGGCAACAAGATCGACATTCCATATGCTGCTTCTGAAGAAGAGCTACGATATCATCTAGGCCTGACCAATTTCACCACAGGCAAGGGAAAGATTAATCTTACAGAGTCCAACCTCCGGCCTCTTGAAGTGTTCATGTGCAGTGTTGTCCGCAAGATGGGATATGGTGATGGCTTCAAGTGGGTTTCTCAATATATCAAGTAG 582 0.4399 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDSYDKERFAESKKELDALLSDESLATVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKINLTESNLRPLEVFMCSVVRKMGYGDGFKWVSQYIK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0888 193 CDD Sar1 2 192 - -
Lan12g0888 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Lan12g0888 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 139 IPR005225 GO:0005525
Lan12g0888 193 Gene3D - 1 193 IPR027417 -
Lan12g0888 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Lan12g0888 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lan12g0888 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lan12g0888 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lan12g0888 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lan12g0888 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lan12g0888 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Lan12g0888 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lan12g0888 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Lan12g0888 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lan12g0888 193 SMART arf_sub_2 4 169 - -
Lan12g0888 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0888 Lan-Chr12 15911200 15913681 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0888 K07953 - gmx:100810637 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0888 12 15911200 15913681 Lan12g0888 12 15911200 15913681 ECH
Lan12g0888 12 15911200 15913681 Lan4g0633 4 8692086 8694337 PCT
Lan12g0888 12 15911200 15913681 Lan19g0857 19 16033531 16035870 PCT
Lan4g0633 4 8692086 8694337 Lan12g0888 12 15911200 15913681 PCT
Lan19g0857 19 16033531 16035870 Lan12g0888 12 15911200 15913681 PCT