Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0846 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGACGATAAACGATGGGCTCAATGAATTCAATGTGGAATTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTTTGGAAAATTCATGTTGAGCTTTCGGAGGCTTATCCATACCAATCTCCCTCTATTGGCTTTGCGAACAAAATATTCCACCCAAATGTTGATGAGTTATCTGGCTTCGTGTGCTTGGATGTCATTAACCAATCATGGAGTCCAATGTTCGATCTTATAAATGTCTTTGAAGTTTTTCTTCCACAACTATTGCTTTATCCAAATGCTTCTGATCCTCTCAACGGTGAAGCAGCATCGTTAATGATGAAGGATAAAAAGCTGTATGACCAAAAAGTTAGAGAGTACTGTGAGCGGTATGCGAAGAAGGAAAACATTACCAACTCTACAGCTGATGAGGATAGTGATGAGGAAGACATGAGTGAAGAAAAAAGTGGATCAAGTGATGTTGATGACATTGCTAGCCATGCTGATCCTTAA 558 0.3907 MSSPSKRREMDVMKLMMSDYTVETINDGLNEFNVEFHGPKESLYEGGVWKIHVELSEAYPYQSPSIGFANKIFHPNVDELSGFVCLDVINQSWSPMFDLINVFEVFLPQLLLYPNASDPLNGEAASLMMKDKKLYDQKVREYCERYAKKENITNSTADEDSDEEDMSEEKSGSSDVDDIASHADP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0846 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 185 - -
Lan12g0846 185 MobiDBLite consensus disorder prediction 157 171 - -
Lan12g0846 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lan12g0846 185 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Lan12g0846 185 SUPERFAMILY UBC-like 4 150 IPR016135 -
Lan12g0846 185 CDD UBCc 7 143 IPR000608 -
Lan12g0846 185 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Lan12g0846 185 MobiDBLite consensus disorder prediction 150 185 - -
Lan12g0846 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lan12g0846 185 SMART ubc_7 4 148 - -
Lan12g0846 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0846 Lan-Chr12 15531210 15534431 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0846 K10576 - gmx:100790685 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0846 12 15531210 15534431 Lan1g1406 1 23802142 23807944 LSH