Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0690 ATGATTCAGTTGATAGCGATGGATTCGAGTTCTGGGCAGCAGGAATTTGATTATTTGTTCAAATTGTTGATGATTGGTGACTCTGGTGTTGGCAAGAGTAGTTTACTTCTCTGTTTCACTGTCGATGATTTTCAAGATCTCTCACCCACAATTGGTGTTGATTTTAAGGTCAAATATGTGATGATGGGTGGTAAAAAGCTGAAGCTTGCCATTTGGGATACAGCTGGTCAGGAGAGATTCAGAACGCTGACAAGTTCTTACTACCGAGGGGCACAAGGGATCATTATGGTTTATGATGTAACACGGCGAGAAACATTTACGAATCTATCTGAAGTATGGGCAAAGGAAGTAGAACTTTATTCAACAAATCCTGACTGCATCAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGCTGATAGGGTTGTGACAAAGAAAGAGGGAATAGACTTTGCCAGGGAATGTGGTTGCCTATTTACTGAATGCAGCGCTAAAACTCGAGTTAACGTACAACAATGCTTTGAAGAGCTTATGTTGAAGATTCTGGATACACCTAGCCTCTTAGCCGAGGGCTCTAAAGGGGTAAAGAAGAACATTTTTAAGGACAAGCAATCCCAGTTTGATGCATCCACAAGCGGGTGTTGCTGA 648 0.4167 MIQLIAMDSSSGQQEFDYLFKLLMIGDSGVGKSSLLLCFTVDDFQDLSPTIGVDFKVKYVMMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEVELYSTNPDCIKMLVGNKVDKEADRVVTKKEGIDFARECGCLFTECSAKTRVNVQQCFEELMLKILDTPSLLAEGSKGVKKNIFKDKQSQFDASTSGCC* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0690 215 ProSiteProfiles small GTPase Rab1 family profile. 15 215 - -
Lan12g0690 215 PRINTS Transforming protein P21 ras signature 20 41 - -
Lan12g0690 215 PRINTS Transforming protein P21 ras signature 42 58 - -
Lan12g0690 215 PRINTS Transforming protein P21 ras signature 60 82 - -
Lan12g0690 215 PRINTS Transforming protein P21 ras signature 124 137 - -
Lan12g0690 215 PRINTS Transforming protein P21 ras signature 159 181 - -
Lan12g0690 215 ProSiteProfiles small GTPase Rho family profile. 13 182 - -
Lan12g0690 215 SMART ran_sub_2 25 214 - -
Lan12g0690 215 SMART rab_sub_5 20 184 - -
Lan12g0690 215 Pfam Ras family 21 182 IPR001806 GO:0003924|GO:0005525
Lan12g0690 215 PANTHER SMALL MONOMERIC GTPASE-RELATED 7 215 - -
Lan12g0690 215 Gene3D - 13 215 IPR027417 -
Lan12g0690 215 ProSiteProfiles small GTPase Ras family profile. 12 215 IPR001806 GO:0003924|GO:0005525
Lan12g0690 215 TIGRFAM small_GTP: small GTP-binding protein domain 18 176 IPR005225 GO:0005525
Lan12g0690 215 CDD Rab18 20 181 - -
Lan12g0690 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 188 IPR027417 -
Lan12g0690 215 SMART ras_sub_4 17 184 - -
Lan12g0690 215 SMART arf_sub_2 7 185 - -
Lan12g0690 215 PANTHER DRAB5-RELATED 7 215 - -
Lan12g0690 215 SMART rho_sub_3 22 184 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0690 Lan-Chr12 13723434 13727841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0690 21 174 EF-hand Containing Proteins AT5G27540 25.625 4.35e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0690 K07910 - gmx:100526880 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0690 12 13723434 13727841 Lan14g0455 14 9848111 9852508 PCT
Lan14g0455 14 9848111 9852508 Lan12g0690 12 13723434 13727841 PCT