Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0586 ATGCAATATCCATCATGCAACAGTGGTAATGGTAATCACTATCTTCTTCTCTTCGTCTCATGCATCGGTTTGATCATAGCACTCAAACACTTCATCTCCATTACGAAATGGATCTTTAACACTTTCTTCAGATCCGAGAAAGACCTCATCACAAGTTATGGTTCATGGGCTCTGGTCACCGGAGCCACCGACGGCATCGGAAAAGCCTTCGCATACCAGCTAGCACAGAGAGGCCTCAACCTTGTTCTTATAAGCAGAAGCTCCCAGAAGCTTGAAACCGTTTCAGGTGAAATTAAAGAGAAACACCCTCATACCAAGATCAAGTTCATCCAAATAGACTTTTCAGGCGACATCTCGGCGGGTCTCCGGCGAATAGTGGAGGTGATCCAAGACATAGACCTTGGCATTGTGGTCAACAACGTAGGGATCACGTACCCTAGGGCCATGTTTTTTCATGAGGTAGATGAAAAAGTGTGGATGGACATAGTGAAAGTGAATATTGAAGGTACCACTAGTGTAACAAAAGCTGTTCTACCAAGGATGATACAAAGGAAAAGAGGTGCAATCATTAACATTGGCTCTGGTGCTGCGGTGGTTGTTCCTTCTCATCCTCTCTATACCATCTATGCTGCTACAAAGGCTTACGTGGATCAATTATCAAGATCTCTCTACGTGGAATATAGACAGTATGGGATCCACGTCCAATGTCAGGTTCCCCTTTATGTGGCAACGAATATGGTATCAAAGGTAGCATCTATTAAGAGAGACTCATTTTTCATACCAACACCTGAGGGATATGCAAGAGCTGCAATAGGTGAAATTGGGTATGAACAAAGGTGCACACCTTATTGGGCTCACTCTATTCAGTGGTGCTTCGCACGCTTAGTCCCAGATCCACTACTTGATGCTTGGCGCTTGTCCATCGGCATTCGCCGAAGAAATGATGGAGAGGCAATTCATGGCAACATCATTTAA 975 0.4451 MQYPSCNSGNGNHYLLLFVSCIGLIIALKHFISITKWIFNTFFRSEKDLITSYGSWALVTGATDGIGKAFAYQLAQRGLNLVLISRSSQKLETVSGEIKEKHPHTKIKFIQIDFSGDISAGLRRIVEVIQDIDLGIVVNNVGITYPRAMFFHEVDEKVWMDIVKVNIEGTTSVTKAVLPRMIQRKRGAIINIGSGAAVVVPSHPLYTIYAATKAYVDQLSRSLYVEYRQYGIHVQCQVPLYVATNMVSKVASIKRDSFFIPTPEGYARAAIGEIGYEQRCTPYWAHSIQWCFARLVPDPLLDAWRLSIGIRRRNDGEAIHGNII* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0586 324 PANTHER RH59310P 15 315 - -
Lan12g0586 324 Gene3D - 49 283 - -
Lan12g0586 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 305 IPR036291 -
Lan12g0586 324 PIRSF 11-beta-HSD1 6 318 - -
Lan12g0586 324 Pfam short chain dehydrogenase 56 250 IPR002347 -
Lan12g0586 324 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 15 315 - -
Lan12g0586 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 143 IPR002347 -
Lan12g0586 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 195 IPR002347 -
Lan12g0586 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 228 IPR002347 -
Lan12g0586 324 CDD 17beta-HSD1_like_SDR_c 54 297 - -
Lan12g0586 324 PRINTS Glucose/ribitol dehydrogenase family signature 56 73 IPR002347 -
Lan12g0586 324 PRINTS Glucose/ribitol dehydrogenase family signature 132 143 IPR002347 -
Lan12g0586 324 PRINTS Glucose/ribitol dehydrogenase family signature 181 197 IPR002347 -
Lan12g0586 324 PRINTS Glucose/ribitol dehydrogenase family signature 209 228 IPR002347 -
Lan12g0586 324 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0586 Lan-Chr12 12712843 12717634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0586 14 314 Lipid Metabolism Gene Families AT1G24470 58.609 1.41e-128 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0586 K10251 - qsu:112015935 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0586 12 12712843 12717634 Lan14g0214 14 2481750 2484756 PCT