Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0171 ATGTGCACACAACAGCTCCTACCTCTACCAACCCATAAACCCTTCTTCCTCAGTCCAATTCCAAAAACATCATCTTTTCACAAATTAAATTGTACCCAAAATGACAAAAACAGTTTTATTAATAAAAGAATTAAGACATTAAGTTTAGAAGAACTTCCCCCAAATGCCCTTATGAAGATGACAGACCCTAAATGGAGAGGAGGCTTTAGTCTTGGACTTGATTTGGGATTGGCTCGAACTGGTCTTGCCCTTAGCAAGGGCTTCACTATACGCCCTTTAACGGTTTTGGAACTGCGGGGACAGAAGCTTGAGGTCAAGATTTTGAGCATTGCTGAACATGAAGAGGTTGATGAGTTTATAATTGGGCTTCCGAAATCTTCTGATGGGAAGGAAACACCACAATCAAACAAAGTCCGTAGTGTTGCGGGAAGGCTCGCTGTTCAAGCTGCCGAGAGGGGTTGGAGAGTATACCTACAAGATGAACATGGGACCACGACAGAAGCGTTAGATCGGATGATCAGATTGGGCCTGAGTAAGTCCTCCCGGCAAGGGAAAATTGACGCGTATGCTGCCGTGATGGTACTGGAGAGATATTTCTCAACATCAGGTCGTGATACGGAACTTGTCTTGCCCAAAAGCTCGGAACTACAAGGAAAACTTCGAAAGGGTCCTCCGAAGGATTTAGATTTCTACTCAGATGAAGACTAA 708 0.4407 MCTQQLLPLPTHKPFFLSPIPKTSSFHKLNCTQNDKNSFINKRIKTLSLEELPPNALMKMTDPKWRGGFSLGLDLGLARTGLALSKGFTIRPLTVLELRGQKLEVKILSIAEHEEVDEFIIGLPKSSDGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTTEALDRMIRLGLSKSSRQGKIDAYAAVMVLERYFSTSGRDTELVLPKSSELQGKLRKGPPKDLDFYSDED* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0171 235 Hamap Putative pre-16S rRNA nuclease [yqgF]. 68 203 IPR005227 GO:0006364
Lan12g0171 235 Pfam Holliday junction resolvase 70 200 IPR005227 GO:0006364
Lan12g0171 235 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 13 233 - -
Lan12g0171 235 CDD YqgF 71 199 IPR005227 GO:0006364
Lan12g0171 235 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 13 233 IPR005227 GO:0006364
Lan12g0171 235 MobiDBLite consensus disorder prediction 210 235 - -
Lan12g0171 235 Gene3D - 70 207 IPR037027 GO:0006139
Lan12g0171 235 SUPERFAMILY Ribonuclease H-like 69 201 IPR012337 -
Lan12g0171 235 SMART rnase_8s 68 168 IPR006641 GO:0006139
Lan12g0171 235 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 71 199 IPR005227 GO:0006364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0171 - - gmx:100810356 343.969