Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0132 ATGTTGCTTTTACTCACATACTCCTTCATGTTCTTCTTCACCCTTCTCTTCATTTCTCCTCCACACATTGTTTCAAGAACTATACTAGATCATCAAGCATTTACACAACCAGCCACTAAAATAGCCATAAAAAACCATAACATCCAAAGCTTCATCAATGCTGGAATAGGCACCAAAATGTTAGGTATAGCACAATTCAAGAGATACTTAACTCGTTTTGGGTATATCCCTATGTATAACAACACTTTCACAGATGAATTTGATGACAAGTTTGAGGTTGGTCTTATTAGATACCAACAAAGGCTTGGGCTCCAAGTAACTGGAAAACTTGACTCCAACACAGTTTCACAAATGATGATACCAAGATGTGGTGTTTCAGACACAACAACACATAATAATCATCATCATATTACAAAGCATTTTATGTATTTTCCTGGAAAACCAAGATGGTCACGTCCTATGCCTAGGACACTCACCTATGCGTTTTCTCCAGTCAACATGATTCATAGTTTGAGCATGCTTGAGATAAGAGAAGCATTCCAACGTGCATTCTTCAAATGGGCTTCTGTTATTCCAGTAAGTTTTGTTGAAGCAGAAGACTATGGTTTTGCTGAGATAAAAATAGGGTTTTACATTGGTGACCATGGTGATGGTGAACCTTTTGATGGGGTGCTTGGTGTGTTGGCACATTCCTTTTCGCCGGAGAGTGGGCGGCTCCACCTCGATGCGGCGGAGACATGGGCAGTAGACTTTGGGGTAACAAAGTCAGAGATGGCAGTAGATTTGGAATCAGTGGCCACACATGAAATTGGACATATATTAGGTTTATCTCATAGTTCAGTTAAAGAGGCTGTTATGTATCCAAGTTTGAGGCCAAGAGATAAGAGAGCTAATTTGAACATTGATGACATAAAAGGAGTGCAATCTCTTTATGGGTCAAATCCTAAGTTTAGGTCTGGTTGGTTACTAGAATCTGATTTGTCTGCAAATCAAGGTGTTCAATTTGGAGTTAAACCTTTGAGTTTGGTTGCTAGTTTCATATTTTTTTCTTTTGCTCATACTTTATGTGCATGTTTATCATAG 1083 0.3878 MLLLLTYSFMFFFTLLFISPPHIVSRTILDHQAFTQPATKIAIKNHNIQSFINAGIGTKMLGIAQFKRYLTRFGYIPMYNNTFTDEFDDKFEVGLIRYQQRLGLQVTGKLDSNTVSQMMIPRCGVSDTTTHNNHHHITKHFMYFPGKPRWSRPMPRTLTYAFSPVNMIHSLSMLEIREAFQRAFFKWASVIPVSFVEAEDYGFAEIKIGFYIGDHGDGEPFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGVTKSEMAVDLESVATHEIGHILGLSHSSVKEAVMYPSLRPRDKRANLNIDDIKGVQSLYGSNPKFRSGWLLESDLSANQGVQFGVKPLSLVASFIFFSFAHTLCACLS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0132 360 SUPERFAMILY PGBD-like 56 128 IPR036365 -
Lan12g0132 360 PANTHER METALLOENDOPROTEINASE 4-MMP 31 350 - -
Lan12g0132 360 SMART col_5 146 313 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lan12g0132 360 Pfam Putative peptidoglycan binding domain 64 118 IPR002477 -
Lan12g0132 360 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lan12g0132 360 PRINTS Matrixin signature 180 195 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lan12g0132 360 PRINTS Matrixin signature 204 232 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lan12g0132 360 PRINTS Matrixin signature 265 290 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lan12g0132 360 PRINTS Matrixin signature 299 312 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lan12g0132 360 CDD ZnMc_MMP 149 312 IPR033739 GO:0008237|GO:0008270
Lan12g0132 360 Gene3D Collagenase (Catalytic Domain) 55 317 IPR024079 GO:0008237
Lan12g0132 360 PANTHER MATRIX METALLOPROTEINASE 31 350 - -
Lan12g0132 360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 315 - -
Lan12g0132 360 Pfam Matrixin 156 312 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0132 Lan-Chr12 1526870 1528140 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0132 - K07999 gmx:100781237 493.812