Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0099 ATGAATCCCGAGTATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTCGGCAAGTCATGTCTTCTTCTGAGATTTGCTGATGATTCATACATTGACAGCTACATAAGCACCATTGGAGTTGATTTCAAAATACGCACTGTTGAGCAGGATGGGAAGACAATTAAACTACAGATTTGGGATACTGCTGGGCAAGAAAGATTTAGAACAATAACCAGTAGCTACTATCGTGGGGCACATGGAATCATTATTGTTTATGATGTCACAGATGAAGAGAGCTTCAAAAATGTGAAGCAGTGGCTCAGTGAAATCGACCGCTATGCCAGTGATAATGTTAACAAACTTTTGGTTGGAAACAAGAGTGATTTGACAGCGAATAGAGCTGTCTCATATGATACAGCTAAAGAATTTGCAGATGAAATTGGCATACCTTTTATGGAAACAAGTGCAAAAGATTCTACAAATGTGGAACAGGCATTCATGGCCATGTCTGCTTCTATCAAGAATAGAATGGCAAGCCAACCATCTGCAAATAATGCAAGGCCTCCAACAGTGCAAATCAAAGGACAACCAGTTGGGCAGAAAAGTGGGTGTTGCTCTTCCTAA 612 0.4052 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFKNVKQWLSEIDRYASDNVNKLLVGNKSDLTANRAVSYDTAKEFADEIGIPFMETSAKDSTNVEQAFMAMSASIKNRMASQPSANNARPPTVQIKGQPVGQKSGCCSS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0099 203 TIGRFAM small_GTP: small GTP-binding protein domain 7 164 IPR005225 GO:0005525
Lan12g0099 203 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 6 202 - -
Lan12g0099 203 Gene3D - 2 201 IPR027417 -
Lan12g0099 203 SMART ras_sub_4 6 172 - -
Lan12g0099 203 SMART arf_sub_2 1 173 - -
Lan12g0099 203 SMART ran_sub_2 14 202 - -
Lan12g0099 203 PANTHER LD21953P-RELATED 6 202 - -
Lan12g0099 203 Pfam Ras family 10 169 IPR001806 GO:0003924|GO:0005525
Lan12g0099 203 ProSiteProfiles small GTPase Ras family profile. 1 203 IPR001806 GO:0003924|GO:0005525
Lan12g0099 203 MobiDBLite consensus disorder prediction 173 203 - -
Lan12g0099 203 ProSiteProfiles small GTPase Arf family profile. 2 178 - -
Lan12g0099 203 CDD Rab1_Ypt1 7 172 - -
Lan12g0099 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 188 IPR027417 -
Lan12g0099 203 PRINTS Transforming protein P21 ras signature 9 30 - -
Lan12g0099 203 PRINTS Transforming protein P21 ras signature 32 48 - -
Lan12g0099 203 PRINTS Transforming protein P21 ras signature 50 72 - -
Lan12g0099 203 PRINTS Transforming protein P21 ras signature 112 125 - -
Lan12g0099 203 PRINTS Transforming protein P21 ras signature 147 169 - -
Lan12g0099 203 SMART rab_sub_5 9 172 - -
Lan12g0099 203 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Lan12g0099 203 ProSiteProfiles small GTPase Rab1 family profile. 4 201 - -
Lan12g0099 203 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0099 Lan-Chr12 1093818 1097899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0099 8 153 EF-hand Containing Proteins AT5G27540 28.758 5.87e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0099 K07874 - gmx:100306147 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0099 12 1093818 1097899 Lan1g2070 1 35909725 35913274 LSH