Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0087 ATGTATGGCGGAGATGAAGTATCAGCGATAGTAGTTGACTTGGGTTCACACACATGCAAAGCTGGTTATGCTGGTGAAGATGCTCCCAAGGCTGTCTTTCCTTCTGTTGCTGGAGCAGTTGATCACATGGATATTGATGAATCAGATAATGCTGAAAAGAGCTCTGTGTCTGCTGAGAAAGACAAGGGAAAGAGGAAACTGTATGTAGGATCTCAGTCCTTGGGGTACCGCAGAGACCATATGGAGGTGCTGTCTCCATTTAAGGATGGAATTGTTGCTGACTGGGATATTGTTGATAGCATATGGGATCATGCCTTCAGGGAGTGCTTATTGATTGATCCTAAAGAGCATCCCATGCTTCTTGCAGAACCTTCTTCTAACACTCAACAACAGCGGGAAAGGGCAGCAGAGCTTATGTTTGAGAAGTACAAAGCACCTGCATTGTTCTTGGCAAAGAATGCTGTTTTGACTTCTTTCGCATCAGGTCGTGCTACGTCATTAGTTGTTGATTGTGGTGGGGGATCAACTACAGTTGTGCCAGTACATGATGGCTATGTTCTTCAGAAGGCTGTTGCAACCACTCCAATTGGAGGTGAATTTCTTACAGACTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATTGTGATAAAACCACGGTATTCTTTTAGGAGAAAGGAAATACGTCCTGGAGAGTTGCAGACTGTTGATCTTGATTTTCCGAATACTACTGAAAGCTACAAACTATACGCCCAGAGGTTGATTGCTAGTGATATCAAGGAGTCTGTGTGTCGAGCTCCAGATACTCCATATGATGAGAGTGCATATTCGAACATCCCAACGACAGCATATGAGCTTCCTGATGGCCAGACAATTGAAATTGGTGCTGATAGATTTAAGATTCCAGATGTTCTTTTTACTCCGTCCCTGGTTCAGACAATTCCGGGCATGGAGAGCTTTGCAGAAATTGCTCCTACAGTTCGTGGCTTACCTCAAATGGTTATAGATAGTATTAATAAGTGTGATGTAGACATTCGAAGAGAATTATTTAGTAGCATACTGCTTGCAGGTGGCACAGCTTCAATGCAGCAATTGAAGGAACGCCTCGAGAAAGAATTGCTAGAGGAATCCCCTCACGCCGCTAGAGTAAAAGTATTGGCCAGTGGAAATGCAACTGAAAGAAGGTTTAGTGTTTGGATAGGAGGGAGTATATTGGCCTCCCTTGGCTCTTTCCAGCAAATGTGGTTCTCCAAGACTGAGTATGAAGAACATGGAGCTTCATATATTCAAAGAAGATGTCCTTAA 1302 0.4355 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVAGAVDHMDIDESDNAEKSSVSAEKDKGKRKLYVGSQSLGYRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVVPVHDGYVLQKAVATTPIGGEFLTDCLMKSLESKGIVIKPRYSFRRKEIRPGELQTVDLDFPNTTESYKLYAQRLIASDIKESVCRAPDTPYDESAYSNIPTTAYELPDGQTIEIGADRFKIPDVLFTPSLVQTIPGMESFAEIAPTVRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKELLEESPHAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKTEYEEHGASYIQRRCP* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0087 433 PANTHER ACTIN 2 432 IPR004000 -
Lan12g0087 433 CDD NBD_sugar-kinase_HSP70_actin 10 192 - -
Lan12g0087 433 Gene3D - 172 371 - -
Lan12g0087 433 Gene3D - 1 171 - -
Lan12g0087 433 Gene3D Actin; Chain A, domain 4 198 311 - -
Lan12g0087 433 SUPERFAMILY Actin-like ATPase domain 162 432 IPR043129 -
Lan12g0087 433 Gene3D - 372 433 - -
Lan12g0087 433 PANTHER - 2 432 - -
Lan12g0087 433 PRINTS Actin signature 28 37 IPR004000 -
Lan12g0087 433 PRINTS Actin signature 131 144 IPR004000 -
Lan12g0087 433 PRINTS Actin signature 156 175 IPR004000 -
Lan12g0087 433 SUPERFAMILY Actin-like ATPase domain 5 169 IPR043129 -
Lan12g0087 433 SMART actin_3 7 433 IPR004000 -
Lan12g0087 433 Pfam Actin 4 432 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0087 Lan-Chr12 958601 974446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0087 1 432 Miscellaneous Gene Families AT3G53750 37.701 2.62e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0087 K11340 - gmx:100785066 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0087 12 958601 974446 Lan1g0926 1 19962833 19974759 LSH