Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0059 ATGCAAGGGGCACTAATTTCTTGCATTTTAATTCTTAGTTTTGTTTCACCTTCTTTATGTTTCAAGAGGTCGAATTTTGGAGTTGAAACTGAAGAATCAACTTATAATGTGATGAATTATGGTGCTAATGTGGATGGAAAATCTGATGATTCAAATGCATTTTTAAGTGCATGGAAAAAAGCATGTGAAGCTGAAGGAATGCAAACTCTTGTTATACCAAAAGGAAAAGTATTCATGTTGAAGAACTTAGTGCTAAAGGGTCCATGCAAAGCTACTAAAATTCACATTCAGCTCTTAGGGAAGATAGTTGCACCAACAAAGGATCAATGGGGTGAAGATAAGACACATTTGATTACAATCTCAAAAGTAAATTCTCTCACAATTGATGGTGGAGGTTATATTGAAGGCAATGGCAATACTTGGTGGGAGACATGCAAAAAATGTTCACGACCTCGTCTTTTGAGGTTTAGTTCATGCAAAGATTTAAGTGTTAGTTCCCTACACATAACTAATAGCCCAGGAGCTCACATATCCATAAATAATTGTGAGCATGCAAAATTCATTAATATGAATATTAATGCTCCTGGTAATAGCCCTAACACTGATGGGTATGATATTTCTAATTCTAAAAATATAGTGTTTGAAGATTCTACTATATCAGTTGGTGATGACTGCATTGCTGTCAATAGAGGCTGTTCTTTTATCTATGCTACTAGGATTATATGTGGACCAGGCCATGGGATAAGCATTGGAAGCCTTGGGAAAACTAAAGATTATGAAACAGTTGAAGAAATTCATGTCAAGAATTGTACCTTTAAAGGGACAACAAATGGAGCAAGAATCAAGACATGGGAGGGTGGATCAGGTTATGTAAGGAAAATCACTTATGAGAATATCATACTTCAAGATTCCCGCAACCCAATCATTATAAACCAGCACTATATTAATAAAATTTCAAATAATGGAGAGAAATCATTACAAATTAGTGATGTGACATTCCAAGGGTTTGAAGGAACTTGTGCTGATGAAAAAGCTATTACCTTAAATTGCAACAACAATGGTTGCTTCAACATTAAACTTGATCAAATTAACATTGTCTCTTCTAACCCAAAAAAGAAAGCACAAGCTTCTTGCAGCAATGTCCATGGAAGAGTTGGACAAGTTATTCCTAAAGTCCCATGCATGTTGAAGTAA 1194 0.3518 MQGALISCILILSFVSPSLCFKRSNFGVETEESTYNVMNYGANVDGKSDDSNAFLSAWKKACEAEGMQTLVIPKGKVFMLKNLVLKGPCKATKIHIQLLGKIVAPTKDQWGEDKTHLITISKVNSLTIDGGGYIEGNGNTWWETCKKCSRPRLLRFSSCKDLSVSSLHITNSPGAHISINNCEHAKFINMNINAPGNSPNTDGYDISNSKNIVFEDSTISVGDDCIAVNRGCSFIYATRIICGPGHGISIGSLGKTKDYETVEEIHVKNCTFKGTTNGARIKTWEGGSGYVRKITYENIILQDSRNPIIINQHYINKISNNGEKSLQISDVTFQGFEGTCADEKAITLNCNNNGCFNIKLDQINIVSSNPKKKAQASCSNVHGRVGQVIPKVPCMLK* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0059 397 SMART pbh1 291 312 IPR006626 -
Lan12g0059 397 SMART pbh1 262 283 IPR006626 -
Lan12g0059 397 SMART pbh1 182 208 IPR006626 -
Lan12g0059 397 SMART pbh1 209 230 IPR006626 -
Lan12g0059 397 PANTHER - 4 395 - -
Lan12g0059 397 Pfam Glycosyl hydrolases family 28 62 382 IPR000743 GO:0004650|GO:0005975
Lan12g0059 397 Gene3D - 23 392 IPR012334 -
Lan12g0059 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Lan12g0059 397 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 4 395 - -
Lan12g0059 397 SUPERFAMILY Pectin lyase-like 32 395 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0059 Lan-Chr12 533600 537516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0059 1 395 Glycoside Hydrolase AT5G17200 39.813 2.82e-100 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0059 K01184 - gmx:100801217 429.869