Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1136 ATGGCAAGCCTTCCTGGAAAATTTGGTCCTTCAAATGGCTCTATTTATGTATGCAACTTGCCTTATGGGACTGACGAGAATATGTTGGCTGAATTTTTTGGGACAATTGGATTAGTAAAGAAGGATAAACGCACAGGGAGACCGAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACCGTAACATACGAGGACCCACATGCTGCTTTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGTAGTACCATAGGAGTTTATATAGCAGAGTCAAAAAACAAGGATGACCAAACATTCAATCCAGTGGTAGAACCACTTGTTTCTGATAATGTTGGAGTAGAGGAAACTCCTGCGGATGTTAATGGGGGTAGTGGAAGAGGTAGAGGTCGAAATGAAACTTCAGGCAAAGCTTGGAAACAAGATGGTGATTGGATGTGTACGAATACAAGTTGCAACAATGTGAATTTTGCTTTTCGTGGTGCGTGCAACCGCTGTGGAACTGCTCGCCCAGCTGGCGCTCCAGGTGCTGCAGGTGGCCGTGGCCGTGGCAAGGGACGTGGCGGACAGGATACTGGGAGTGCTGGTCGTCCAGGTGGTGGACTCTTTGGACCCAATGATTGGTCCTGTCCAATGTGTGCAAATATCAATTGGGCAAAGCGTAACAAATGCAATATTTGCAACACCAATAAGCCTGGCACTAGCGAGGGTGGTGTAAGGGGAGGGCGAGCTGGAGGTTACAAAGAGCTGGATGAAGAAGAACTAGAGGAAACTAAACGTCGTAGGCGGGAAGCTGAAGATGATGGTGAACTGTATGATGAGTTTGGAAATCTTAAGAAGAAATTTCGTGCCAAAGCACAGCAAACTGAAGCTGCACGAGTTCTTCCTGGTTCTGGGCGTGCTGGGTGGGAGGTTGAGGAACTAGGGATTGATAGGGATGCTAGAGAAAGGAGTAGAGACAGAGGACGGGAACATAATGATGGTTATAACAGGCACAAAGAGCGAAATGATAAAGAGAGGCAAAGAAGTCGAAGTAGAGAGAGGGATCGGGGAAGAGCTCGAGACTGGGATTATGATGATCGAGATAGAGATTATGGGCGAGATAGGGACGGAAGTAGACGCCATTATTAA 1152 0.4618 MASLPGKFGPSNGSIYVCNLPYGTDENMLAEFFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSTIGVYIAESKNKDDQTFNPVVEPLVSDNVGVEETPADVNGGSGRGRGRNETSGKAWKQDGDWMCTNTSCNNVNFAFRGACNRCGTARPAGAPGAAGGRGRGKGRGGQDTGSAGRPGGGLFGPNDWSCPMCANINWAKRNKCNICNTNKPGTSEGGVRGGRAGGYKELDEEELEETKRRRREAEDDGELYDEFGNLKKKFRAKAQQTEAARVLPGSGRAGWEVEELGIDRDARERSRDRGREHNDGYNRHKERNDKERQRSRSRERDRGRARDWDYDDRDRDYGRDRDGSRRHY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1136 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Lan11g1136 383 Gene3D - 12 95 IPR012677 -
Lan11g1136 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Lan11g1136 383 MobiDBLite consensus disorder prediction 310 383 - -
Lan11g1136 383 MobiDBLite consensus disorder prediction 252 275 - -
Lan11g1136 383 MobiDBLite consensus disorder prediction 240 275 - -
Lan11g1136 383 CDD RRM_SARFH 15 97 - -
Lan11g1136 383 Coils Coil 255 275 - -
Lan11g1136 383 Pfam Zn-finger in Ran binding protein and others 149 178 IPR001876 -
Lan11g1136 383 Pfam Zn-finger in Ran binding protein and others 214 240 IPR001876 -
Lan11g1136 383 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 381 - -
Lan11g1136 383 ProSiteProfiles Zinc finger RanBP2 type profile. 148 179 IPR001876 -
Lan11g1136 383 ProSiteProfiles Zinc finger RanBP2 type profile. 204 240 IPR001876 -
Lan11g1136 383 SUPERFAMILY Ran binding protein zinc finger-like 142 180 IPR036443 -
Lan11g1136 383 MobiDBLite consensus disorder prediction 177 207 - -
Lan11g1136 383 MobiDBLite consensus disorder prediction 312 383 - -
Lan11g1136 383 SUPERFAMILY Ran binding protein zinc finger-like 206 241 IPR036443 -
Lan11g1136 383 SMART zf_4 150 176 IPR001876 -
Lan11g1136 383 SMART zf_4 213 237 IPR001876 -
Lan11g1136 383 ProSitePatterns Zinc finger RanBP2-type signature. 152 173 IPR001876 -
Lan11g1136 383 ProSitePatterns Zinc finger RanBP2-type signature. 215 234 IPR001876 -
Lan11g1136 383 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Lan11g1136 383 MobiDBLite consensus disorder prediction 121 147 - -
Lan11g1136 383 Gene3D - 210 241 - -
Lan11g1136 383 Gene3D - 145 181 - -
Lan11g1136 383 SMART rrm1_1 14 95 IPR000504 GO:0003723
Lan11g1136 383 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1136 Lan-Chr11 15628674 15636472 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1136 - - gmx:100780819 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1136 11 15628674 15636472 Lan11g1136 11 15628674 15636472 ECH