Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0950 ATGCTTTGCAAATTTCACCTGAAAAAGCAGTTATATTTCCCTCCAACCCTTTATTCATTTGGTTATCAATGTTTCACACACTCTTCTCACCAACCCTATCCAAGGATCCCTCATAGTAGACTCAGAGCTTATGTGCCAGTCCCTGATGAAACCCATTTCAGAGACCCTGACACTGTTCACTTGTTTTGTTCTAAAGCCCTCAAAGTTTCAGCCAAAAGGGCCTTTCTTCCTGAAGGAAAACAGTTACATGCCCATTTGATAAAGATTGGATTTTGTCATGTCCTGTCTTTGCAAAATCAGATTTTGAGTGTTTATCTTAAATGTAAGGAAACTGGGGATGCAAAGAAACTGTTTGAGAAATTGCCTGGGAGAAATGTGGTGTCTTGGAATATTGTGATTCGTGGTATTGTTGGATGTGGTGATGAAAATGGCACTAATTCACAACTAGGTTTTTATTATTTTAGGAGGATGTTGTTGGAGAAGGTGGTTCCAGATGATACAACTTTTAATGCTCTATTTTGTGTATGTGCTATGTTTCATGATATTAACATGGGTGTCCAACTGCATTGTTTGACAGTGAAACTAGGATTTGATTTGGATTGTTTTGTTCGTAATGCTCTCATCGGCTTATATGGAAAATGTGGTTCAGTTGAGGAAGCAAAAAGGGTGTTTAATGATGTTCTATGTAAAGATTTGGTTTTGTGGAATGTGATGATTTCTTGCTATGCCTTGAACTGTTTACCGGAAGATGCTTTCAGAACTTTCAACTCGATGCGATTTGATGGAGTAAATGGGGATGAGTTCACTTTTAGCAGCCTGCTTAGTATATGTGATACTTTGGAATATTATGATTTTGGAAAGCAGGCTCACAGCCTTGCTCTAAGGCAGTCACTTGATTCACATGTTTCAGTAGCTAGTGCATTGATCAACATGTATGCGAAAAATGAAAATATAGTTGATGCACACAATGTATTTCGTAAGACAGCGATTCAAAATGTTGTGGCGTGGAACACCATAATTGTTGGGTGTGGTAATCATGGAGATGGGAATGATGTTATGAAGCTTCTCAGGGAGATGCTACGCGAAGGGTTTTTCCCTGATGAAGTGACTATTTCCAGCACTCTTAGTTCATGTGCCCATGCTTGTGCCATTACTGAAACATTGCAAGCTCATGCCTTGGCAGTTAAATTATCATTTCAAGAATTTTTATCCGTTTCAAATTCTTTGATTACTGCATACTCGAAGTGTGGTAGCATTGCTAGTGCACTTATCTGCTTCAAATTAATTTCAGAACCTGATGTTATTACATGGACCTCACTGATAAATGCATATGCATTCAATGGTCTTGCCAAAGAAGCAATTGAGATGTTTGAGAAGATGCTATCTAGTGGTAAAATGCCGGATCGAATTTCTTTTCTTGGTGTTCTCTCTGCTTGTGCTCATAGCGGACTCGTGACTATGGGACTGCACTACTTCAAATTAATGACCATTTTTTATCGGATTGTTCCTGATTCAGAGCATTATACCTGCCTTGTTGACCTTCTTGGGCGGTACGGTCTTATAGATGAGGCCTTTGAATTCTTGAGTTCAATGCCAATGGAAGCTGAACCAAACACATTAGGAGCTTTCATTGGATCTTGCAAACTCCATGCAAATATAGGCCTAGCTAAATGTGCAGCAGAAAAGCTGTTCATCAAAGAGCCAGAGAAGATTGTGAACTATGCTGTCATGTCTAACATTTATGCTTCTCACAAAAATTGGTATGATGTCGAAAGAGTTCGAAAAATGATAGGGGACAAGCGTGATGCAAAGGTTCCAGGTTTTAGCTGGATAGAGATTGCAAATGAAGTTTATTCATATGTATCAGGTGATAAGAATAGCCACCCTAAAGCTTTAGAAATGTATGCTACGTTAAAAATGCTGCTTAGGTCAATGAAGGAAGAAATGTTATGA 1953 0.3876 MLCKFHLKKQLYFPPTLYSFGYQCFTHSSHQPYPRIPHSRLRAYVPVPDETHFRDPDTVHLFCSKALKVSAKRAFLPEGKQLHAHLIKIGFCHVLSLQNQILSVYLKCKETGDAKKLFEKLPGRNVVSWNIVIRGIVGCGDENGTNSQLGFYYFRRMLLEKVVPDDTTFNALFCVCAMFHDINMGVQLHCLTVKLGFDLDCFVRNALIGLYGKCGSVEEAKRVFNDVLCKDLVLWNVMISCYALNCLPEDAFRTFNSMRFDGVNGDEFTFSSLLSICDTLEYYDFGKQAHSLALRQSLDSHVSVASALINMYAKNENIVDAHNVFRKTAIQNVVAWNTIIVGCGNHGDGNDVMKLLREMLREGFFPDEVTISSTLSSCAHACAITETLQAHALAVKLSFQEFLSVSNSLITAYSKCGSIASALICFKLISEPDVITWTSLINAYAFNGLAKEAIEMFEKMLSSGKMPDRISFLGVLSACAHSGLVTMGLHYFKLMTIFYRIVPDSEHYTCLVDLLGRYGLIDEAFEFLSSMPMEAEPNTLGAFIGSCKLHANIGLAKCAAEKLFIKEPEKIVNYAVMSNIYASHKNWYDVERVRKMIGDKRDAKVPGFSWIEIANEVYSYVSGDKNSHPKALEMYATLKMLLRSMKEEML* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0950 650 Pfam E motif 550 612 IPR046848 -
Lan11g0950 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Lan11g0950 650 PANTHER OS07G0578800 PROTEIN-RELATED 46 631 IPR045215 GO:0003723|GO:0009451
Lan11g0950 650 Pfam PPR repeat family 332 379 IPR002885 -
Lan11g0950 650 Pfam PPR repeat family 432 480 IPR002885 -
Lan11g0950 650 Pfam PPR repeat family 230 275 IPR002885 -
Lan11g0950 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Lan11g0950 650 Gene3D Tetratricopeptide repeat domain 185 287 IPR011990 GO:0005515
Lan11g0950 650 Gene3D Tetratricopeptide repeat domain 288 398 IPR011990 GO:0005515
Lan11g0950 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Lan11g0950 650 Pfam PPR repeat 205 228 IPR002885 -
Lan11g0950 650 Pfam PPR repeat 407 428 IPR002885 -
Lan11g0950 650 Pfam PPR repeat 507 532 IPR002885 -
Lan11g0950 650 Pfam PPR repeat 306 327 IPR002885 -
Lan11g0950 650 TIGRFAM PPR: pentatricopeptide repeat domain 233 266 IPR002885 -
Lan11g0950 650 TIGRFAM PPR: pentatricopeptide repeat domain 205 232 IPR002885 -
Lan11g0950 650 TIGRFAM PPR: pentatricopeptide repeat domain 334 368 IPR002885 -
Lan11g0950 650 TIGRFAM PPR: pentatricopeptide repeat domain 435 468 IPR002885 -
Lan11g0950 650 Gene3D Tetratricopeptide repeat domain 55 184 IPR011990 GO:0005515
Lan11g0950 650 Gene3D Tetratricopeptide repeat domain 404 642 IPR011990 GO:0005515
Lan11g0950 650 PANTHER OS07G0259400 PROTEIN 46 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0950 Lan-Chr11 9734030 9736128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0950 62 647 Glycoside Hydrolase AT3G49170 31.614 1.41e-98 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0950 - - gmx:100778378 953.74