Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0076 ATGTTTGGTGTCATTAGGCGAAGGGTTGCTTCTGGCAGTCCATCTCCTTTGTTTCTAGGTCAGCCAGTGCAGAAATTCCGGTCTGGCTCGTCAGTTCCGGCAACCGTTTCTTCTATTGTGGAAAAGGAGATTGCATTTCATTCAAGAGGATGTGGAAATGTCCGGAGCTTCTGTCATATATCATCTGGATGCTGGATTAATTCAAAGGCTACGAGGGAGGTTTTTTGTCAACAGGTTTTGATGCAAACATGGAGGCGTCCATTTTCTTCAGACAGTGGAGATTCGGTCGATGTTGTTGTCCCTCCGTTGGCTGAGTCTATTTCTGATGGAACTCTGGCAAAATTTTTGAAGAGGCCTGGTGACAGGGTTAATATTGATGAACCAATAGCTCAAATTGAAACAGATAAGGTCACAATTGATGTTTCTAGCCCTGAATCCGGTGTGATTCTGAAGCTTCTAGTCAATGAGGGGGATACTGTTGAGCCGGGTAACAAGATAGCAATCATTTCAAGGTCCGCTGATGCTACAACTCACGTTGCCCCATCTGAGGCTACACCTGAAAAAGCTGCTCCTCAGCCAACCCAAAAGATTAGTGAAGAAAAGAAAGCACCTAAAGCTGAAGCTGCATCTGTTACAGAGAAGCCCAAGGCACCTCCTGCTCCACATAGCTCTCACTCTGAGCCACAGCTTCCCCCCAAGGAAAGAGAGAGACGAGTTCCTATGACAAGGCTTCGGAAACGAGTTGCCACAAGGTTGAAAGATTCCCAAAACACATTTGCTTTGTTGACAACATTCAATGAAGTCGATATGACAAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTTGTTGAAAAGCATGGAGTCAAATTGGGTCTTATGTCCGGGTTTATCAAAGCTGCTGTCAACGCACTCCAATATCAACCTATTGTAAATGCAGTCATTGATGGGGATGATATCATATACAGAGATTACATAGATATCAGCGTCGCTGTTGGTACTTCAAAGGGCCTTGTGGTGCCAGTTATCCGCAATGCTGATACCATGAACTTTGCGGATATAGAAAAGCAGATCAATACTTTTGCAAAGAAGGCAAATGATGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCCAATGGTGGTGTTTATGGGAGCCTTTTGAGTACCCCTATTATCAACCCCCCTCAGTCTGCAATCCTGGGTATGCATTCCATAGTGAGTCGACCAATGGTTGTCGGAGGAAATGTTGTGCCAAGGCCAATGATGTACGTTGCTCTAACATATGATCATAGAATTATTGATGGAAGAGAGGCAGTGTTCTTTTTGCGACGCATCAAAGATATTGTTGAGGATCCACGCAGGCTTCTTCTAGACATATGA 1398 0.4413 MFGVIRRRVASGSPSPLFLGQPVQKFRSGSSVPATVSSIVEKEIAFHSRGCGNVRSFCHISSGCWINSKATREVFCQQVLMQTWRRPFSSDSGDSVDVVVPPLAESISDGTLAKFLKRPGDRVNIDEPIAQIETDKVTIDVSSPESGVILKLLVNEGDTVEPGNKIAIISRSADATTHVAPSEATPEKAAPQPTQKISEEKKAPKAEAASVTEKPKAPPAPHSSHSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISVAVGTSKGLVVPVIRNADTMNFADIEKQINTFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0076 465 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 235 463 IPR001078 GO:0016746
Lan11g0076 465 SUPERFAMILY Single hybrid motif 96 187 IPR011053 -
Lan11g0076 465 Gene3D - 221 461 IPR023213 -
Lan11g0076 465 MobiDBLite consensus disorder prediction 177 243 - -
Lan11g0076 465 MobiDBLite consensus disorder prediction 228 243 - -
Lan11g0076 465 CDD lipoyl_domain 96 169 - -
Lan11g0076 465 ProSiteProfiles Biotinyl/lipoyl domain profile. 95 170 IPR000089 -
Lan11g0076 465 Gene3D - 94 172 - -
Lan11g0076 465 SUPERFAMILY CoA-dependent acyltransferases 235 464 - -
Lan11g0076 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 465 - -
Lan11g0076 465 Pfam Biotin-requiring enzyme 97 169 IPR000089 -
Lan11g0076 465 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 465 - -
Lan11g0076 465 MobiDBLite consensus disorder prediction 194 209 - -
Lan11g0076 465 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 120 149 IPR003016 -
Lan11g0076 465 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 198 464 IPR006255 GO:0004149|GO:0006099|GO:0045252
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0076 Lan-Chr11 439133 444624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0076 66 463 Acyl Lipid Metabolism Gene Families AT1G54220 28.358 5.43e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0076 K00658 - gmx:100799149 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1318 2 24028226 24035345 Lan11g0076 11 439133 444624 LSH
Lan11g0076 11 439133 444624 Lan9g1474 9 21466498 21473331 LSH