Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g1083 ATGTTGGCGCCAAAAGTGCAAAGAACGTTCTCAACCATAGCACCATTGTTACTATCTCTCTCTTCCATGGCTGATAATTGCACCACCATTGATCAACTCAAACAAGTTCACACCCAAATGATCGTTTCCTCACTCATCATCAACGACCCTTTCGCCGCTAGCCGCTTAATCTCTTCTTCCGCTCTTTCCACCTTCTCAGACCTCAACTACGCTTCTAGAATCTTCTCTTCTATTCACAAACCCAACACATTCATGTGGAATACTCTTATTCGTGCTCATGCTTCTGGACCCAATCCTCGACACTCTCTTTTGCTTTATATCAATATGAGGAGGCTTGGTGCATTGCCTGGGAAACACACTTTTCCTTTTCTTCTTAAGGCGTGTTCGACTTCTTCGTTGTTTAGTTGTTGTAAACAGGTGCATACTCATGTATTGAAATTTGGGTTGGTGTTGGATTTGCATGTTGTTAATGGGTTGGTGAGAGGGTATTGTGTTTCTGGGGATTTGGTTGATGCGCGCTTTCTGTTTGATGGAATGTCTGAGAGAAATTTGAGTCTTTGGACGACGATGATTTGTGGGTATGCTCAGAATTTCTGTTCGAATGAGGCTTTGGTGCTTTTTGATGAGATGATTGTTGAGGGGTTTGAGCCGAATGGCGCGACGTTGGCTTCGGCTTTGTCTGCTTGTGCTAGGTCGGGTTGCCTTGAACTCGGGGAAAGGATACATGAACTTATGAAAGTGAAAGGTTTCGAGGTAGGTGTTATTCTCGGGACCGCGTTGATTTACATGTATGCAAAGAATGGAGAAATTGCGATGGCTTGGAAATTATTTGATGAGATGAATGAAAGAAATATTGTTACATGGAATGCTATGATATGTGGGCTGGCTAGTCATGGACATGTTGAAGATGCTCTTGCTCTGTTTGAGAATCTCAAGAAAGAGCGTGTTGTTGTTCCTAATGATGTGACATTCATCGGGGTTCTATCTGCCTGCTGTCATGGTGGCTTACTTGACGTTGGACGCGATATCTTTTATTCGATGAATACAGAATATGGAATTGAACCAAAGATTGAACATTACGGGTGTTTCGTTGATCTTCTCGGGCGAGGCGGTATGTTACTAGAGGCAGAGGAGTTAATCAAAGGAATGCCGTGGAAGGCGGATGAGGTTCTTTTAGGAGCTTTATTAGCAGCTAGCAAACATAATGGAAATACAAAGGTTGCTGAAAGGGTGGTAAATGAAATTCTTATTCTGGAACCTCAAAATCATGGAGTTCTTGTATCTTTGTCAAATATGTATGCAGAGGCTGGACAATGGCAGAAAGTGTTGAGACTGAGGAAGGTGATGAAAGAAGAGAGACTCAAGAAATCTCCAGGGTGGAGCCTTGTCGCAACTTAA 1398 0.4292 MLAPKVQRTFSTIAPLLLSLSSMADNCTTIDQLKQVHTQMIVSSLIINDPFAASRLISSSALSTFSDLNYASRIFSSIHKPNTFMWNTLIRAHASGPNPRHSLLLYINMRRLGALPGKHTFPFLLKACSTSSLFSCCKQVHTHVLKFGLVLDLHVVNGLVRGYCVSGDLVDARFLFDGMSERNLSLWTTMICGYAQNFCSNEALVLFDEMIVEGFEPNGATLASALSACARSGCLELGERIHELMKVKGFEVGVILGTALIYMYAKNGEIAMAWKLFDEMNERNIVTWNAMICGLASHGHVEDALALFENLKKERVVVPNDVTFIGVLSACCHGGLLDVGRDIFYSMNTEYGIEPKIEHYGCFVDLLGRGGMLLEAEELIKGMPWKADEVLLGALLAASKHNGNTKVAERVVNEILILEPQNHGVLVSLSNMYAEAGQWQKVLRLRKVMKEERLKKSPGWSLVAT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g1083 465 Pfam E motif 404 463 IPR046848 -
Lan10g1083 465 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 464 - -
Lan10g1083 465 TIGRFAM PPR: pentatricopeptide repeat domain 286 320 IPR002885 -
Lan10g1083 465 TIGRFAM PPR: pentatricopeptide repeat domain 186 218 IPR002885 -
Lan10g1083 465 TIGRFAM PPR: pentatricopeptide repeat domain 156 185 IPR002885 -
Lan10g1083 465 TIGRFAM PPR: pentatricopeptide repeat domain 258 286 IPR002885 -
Lan10g1083 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Lan10g1083 465 Gene3D Tetratricopeptide repeat domain 135 233 IPR011990 GO:0005515
Lan10g1083 465 Gene3D Tetratricopeptide repeat domain 7 134 IPR011990 GO:0005515
Lan10g1083 465 PANTHER OS11G0483950 PROTEIN 18 464 - -
Lan10g1083 465 Gene3D Tetratricopeptide repeat domain 234 350 IPR011990 GO:0005515
Lan10g1083 465 Pfam PPR repeat family 183 231 IPR002885 -
Lan10g1083 465 Pfam PPR repeat family 283 333 IPR002885 -
Lan10g1083 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Lan10g1083 465 Pfam PPR repeat 359 384 IPR002885 -
Lan10g1083 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Lan10g1083 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g1083 Lan-Chr10 16023530 16025457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g1083 18 463 Glycoside Hydrolase AT3G49170 32.594 5.64e-68 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g1083 - - mtr:MTR_7g033400 667.151