Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan10g1076 | ATGAGTGTCACAACCAAAATTGCTCCTTCAATGCTTTCCTCTGATTTCGCCAATTTGGCTTCTGAGTCTCATCGTATGCTCACTTTTGGTGCCGATTGGCTCCACATGGATATAATGGACGGGCACTTTGTCCCTAATTTAACTCTAGGTGCTCCAATCATTGAAAGTTTGAGAAAGCACACAAAGGCATATCTTGACTGTCACCTGATGGTTACAAATCCTCTTGATTATGTTGAACCTTTGGGAAAAGCTGGTGCTTCTGGTTTTACCTTCCATATTGAGACATCGAAAGATAACTGGGAAGAACTTATCCAAAGAATTAAGGCGCAGGGCATGAGGCCTGGTGTAGCATTAAAGCCTGGGACACCCGTTGGAGAAGTTTATTCCCTGGTTGAGGCTGAAAATCCGGTAGAACTGGTTCTTGTCATGACTGTAGAACCTGGATTTGGTGGACAAAAGTTTATGCCAGAGATGATGGATAAGGTACGGACTCTAAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGTTTAGGGCCTTCAACCATAGACGCTGCCGCATCGGCAGGAGCAAACTGTATTGTTGCAGGGAGTTCAGTGTTTGGAGCCCCTGAGCCAGCTCAAGTAATATCCTTACTGAGGAACTCTGTTGAGAAAGCCCAGCAAACACATTGA | 681 | 0.4493 | MSVTTKIAPSMLSSDFANLASESHRMLTFGADWLHMDIMDGHFVPNLTLGAPIIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHIETSKDNWEELIQRIKAQGMRPGVALKPGTPVGEVYSLVEAENPVELVLVMTVEPGFGGQKFMPEMMDKVRTLRKKYPSLDIEVDGGLGPSTIDAAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKAQQTH* | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan10g1076 | 226 | Gene3D | Aldolase class I | 1 | 226 | IPR013785 | - | |
| Lan10g1076 | 226 | Hamap | Ribulose-phosphate 3-epimerase [rpe]. | 4 | 218 | IPR026019 | GO:0004750|GO:0006098 | |
| Lan10g1076 | 226 | TIGRFAM | rpe: ribulose-phosphate 3-epimerase | 6 | 216 | IPR026019 | GO:0004750|GO:0006098 | |
| Lan10g1076 | 226 | PANTHER | RIBULOSE-5-PHOSPHATE-3-EPIMERASE | 1 | 225 | IPR000056 | GO:0005975|GO:0016857 | |
| Lan10g1076 | 226 | ProSitePatterns | Ribulose-phosphate 3-epimerase family signature 1. | 34 | 48 | IPR000056 | GO:0005975|GO:0016857 | |
| Lan10g1076 | 226 | Pfam | Ribulose-phosphate 3 epimerase family | 6 | 203 | IPR000056 | GO:0005975|GO:0016857 | |
| Lan10g1076 | 226 | PIRSF | RPE | 1 | 226 | IPR026019 | GO:0004750|GO:0006098 | |
| Lan10g1076 | 226 | PANTHER | RIBULOSE-PHOSPHATE 3-EPIMERASE | 1 | 225 | - | - | |
| Lan10g1076 | 226 | ProSitePatterns | Ribulose-phosphate 3-epimerase family signature 2. | 140 | 162 | IPR000056 | GO:0005975|GO:0016857 | |
| Lan10g1076 | 226 | CDD | RPE | 6 | 216 | IPR000056 | GO:0005975|GO:0016857 | |
| Lan10g1076 | 226 | SUPERFAMILY | Ribulose-phoshate binding barrel | 5 | 221 | IPR011060 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan10g1076 | Lan-Chr10 | 15981584 | 15984117 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan10g1076 | K01783 | - | gmx:100500085 | 415.231 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan10g1076 | 10 | 15981584 | 15984117 | Lan6g1708 | 6 | 28189361 | 28193829 | LSH |