LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan10g1074	ATGGAAATCAACAAGCTTAGCCAATATGAAAGTGTGTTCAATCACTTTGATAAAAATGGTGATGGGAAGATATCACCACCGGAGCTCCAACAATGCGTGGAGGCTATCGGCGGTACATTGTCGGACGAAGATGCCGAAGAGGCGGTAAGAATTATGGACTCGGATGGTGATGGGCTATTGGGTTTGGATGATTTTGTGAGATTTTTGGAGGAAGGGAAAGAGGAAGAAAAAGTGAATGACTTAAGAGAAGCTTTTAAGATATATGAGATGGATGGAAGTGGTTGCATAACACCAAAGAGTCTTAAAAGAACACTTAGTAGGTTAGGTGAGTCTAGAACTATAGATGAGTGTCAAGTTATGATTTCTTATTTTGATCTAAATAGAGATGGGGTTCTTAGTTTTGATGAATTTAAGGTCATGATGTTGTAA	429	0.3893	MEINKLSQYESVFNHFDKNGDGKISPPELQQCVEAIGGTLSDEDAEEAVRIMDSDGDGLLGLDDFVRFLEEGKEEEKVNDLREAFKIYEMDGSGCITPKSLKRTLSRLGESRTIDECQVMISYFDLNRDGVLSFDEFKVMML*	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan10g1074	142	Pfam	EF-hand domain pair	10	69	IPR002048	GO:0005509
	Lan10g1074	142	PANTHER	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	4	142	-	-
	Lan10g1074	142	Gene3D	-	73	142	-	-
	Lan10g1074	142	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	4	142	-	-
	Lan10g1074	142	SMART	efh_1	80	108	IPR002048	GO:0005509
	Lan10g1074	142	SMART	efh_1	8	36	IPR002048	GO:0005509
	Lan10g1074	142	SMART	efh_1	44	72	IPR002048	GO:0005509
	Lan10g1074	142	SMART	efh_1	116	142	IPR002048	GO:0005509
	Lan10g1074	142	SUPERFAMILY	EF-hand	6	142	IPR011992	-
	Lan10g1074	142	ProSiteProfiles	EF-hand calcium-binding domain profile.	112	142	IPR002048	GO:0005509
	Lan10g1074	142	ProSiteProfiles	EF-hand calcium-binding domain profile.	76	111	IPR002048	GO:0005509
	Lan10g1074	142	ProSitePatterns	EF-hand calcium-binding domain.	53	65	IPR018247	-
	Lan10g1074	142	Gene3D	-	1	72	-	-
	Lan10g1074	142	ProSiteProfiles	EF-hand calcium-binding domain profile.	4	39	IPR002048	GO:0005509
	Lan10g1074	142	ProSiteProfiles	EF-hand calcium-binding domain profile.	40	75	IPR002048	GO:0005509
	Lan10g1074	142	CDD	EFh	80	141	IPR002048	GO:0005509
	Lan10g1074	142	Pfam	EF-hand domain pair	93	141	IPR002048	GO:0005509
	Lan10g1074	142	ProSitePatterns	EF-hand calcium-binding domain.	17	29	IPR018247	-
	Lan10g1074	142	ProSitePatterns	EF-hand calcium-binding domain.	125	137	IPR018247	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan10g1074	Lan-Chr10	15970182	15970781	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan10g1074	4	141	EF-hand Containing Proteins	AT1G76650	53.623	3.00e-47	149

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan10g1074	K13448		-	qsu:111991949	207.608