Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan10g0976 | ATGTTTATTTCCCACAAACCTCGTCAAATATCACTATTCTCCTTTCATTTCCTTCATTTAATAACCTTCAATAAACCACACCCCATTCCTTCCTCAATACGACGCCGTTTCCTCTCCTCTTCTGACCCATCATGGCTATCCCTACCTGGCAACCCACTCATCCAATGGCCCTCACTTCCACCACCAACCACACCGAACCTAAACCCGAACCCATACCTCAAACCCGAACCTGTAACCAACAATCACTTCTCTCTAATTTCTAATCTCTTCACTGACCCTTCAATCATTCCCGGTCCGGTTCTCCATGAAAAACTCGACCGGTCCGGTATTGAACCGGGTTTATCACTTCTTCATTCTGTTTTTGAATATTTCGGTTCATCACCAAAACTTCTTCACTCGCTGTTTCTTTGGGCTTTGAACCGACCCGGGTTTAGACCTGACCCGAAACTGTTTGACTCTGTGGTCAACGTTCTTGCGAAATCGAAGGAGTTTCACTCTGCTTGGAATTTGATTCGGGATCATATTGATGATGAAGGAGAACAAAGATTGATTTCTATTGCTACTTTTGCTACCTTGATTCGACGTTATGCTCGTGCAGGTATGCGCCAACCTGCAATTCGAACATTTGAGTTTGCAAAAGATCATGCATCAATTCTGGATTCTGGATCAGAAATGAGTTTATTTGGGATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTAAAGGAAGCTTCAGATTATTTCCTTCGGAGAAAGAAAATGGATCCGAGTTGGGTTCCATCGATTCGGATTTATAACATACTGTTAAATGGATGGTTTCGATCAAGAAAACTCAAGCAGGGTGAGAGACTTTGGGAAGAGATGAAGGAGGAGAATGTAAGGCCAAGTGTTGTGACATATGGCACACTCGTGGAAGGATATTGCCGGATGCGTCGTGTTGAAAAGGCACTTGAAATGGTTGATGATATGGCCAAAGAAGGAATTGAAGCGAATGCAATCGTTTATAACCCAATAATTGATGCATTAGCCGAAGCTGGCAGATTTAAGGAGGCTTTGGGTATGGTGGAGCGTTTTCATGTTTTAGACATCGGCCCGACCGAGTCGACATACAATTCTCTGGTGAAAGGGTTTTGTAAGGCAGGAGATCTTGAAGGTGCCAGTAAGATTCTGAAAATGATGATAAATAGGGGTATCGTCCCAAGCCCCACCACATATAACTACTTCTTCAGGTACTTTTCAAGATGTGGAAAAATTGAGGAGGGGATGAACTTGTATACCAAATTGATTGAATCTGGTTATACCTTGGATCGACTAACTTACCATCTTCTGTTGAAGATGTTATGTGAAGAGGAGAGGTTAAATTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCAGAAAGGACATGACATGGATTTGGCTACGAGTACCATGTTGGTTCATTTACTTTGCAAAATGCATAGATTGGAAGAGGCTTTTGCGGAATTTGAGGACATGATTCGTAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGAATGTCGAGTTAAAGAAAAAAGGCATGACTGAAATGGCTCAAAGACTTTGTAAGTTGATGTCTTCTGTTCCCCATTCTACTAAATTGCCAAATACTTATGAGCAAGATAGAGATGATGCATATGCACGAAGGAAATCTATTATTCAGAAAGCCAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGACCCTAGAGAACTTGACAAGTATAGAAATTCCTCAGAAAATGCTGTCTCAAATGAAAAACTATTTGATAAAGGAGACTGA | 1806 | 0.4142 | MFISHKPRQISLFSFHFLHLITFNKPHPIPSSIRRRFLSSSDPSWLSLPGNPLIQWPSLPPPTTPNLNPNPYLKPEPVTNNHFSLISNLFTDPSIIPGPVLHEKLDRSGIEPGLSLLHSVFEYFGSSPKLLHSLFLWALNRPGFRPDPKLFDSVVNVLAKSKEFHSAWNLIRDHIDDEGEQRLISIATFATLIRRYARAGMRQPAIRTFEFAKDHASILDSGSEMSLFGILLDSLCKEGSVKEASDYFLRRKKMDPSWVPSIRIYNILLNGWFRSRKLKQGERLWEEMKEENVRPSVVTYGTLVEGYCRMRRVEKALEMVDDMAKEGIEANAIVYNPIIDALAEAGRFKEALGMVERFHVLDIGPTESTYNSLVKGFCKAGDLEGASKILKMMINRGIVPSPTTYNYFFRYFSRCGKIEEGMNLYTKLIESGYTLDRLTYHLLLKMLCEEERLNLAVQVSKEMRQKGHDMDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQRMNVELKKKGMTEMAQRLCKLMSSVPHSTKLPNTYEQDRDDAYARRKSIIQKAKAFSDMLKDCKDPRELDKYRNSSENAVSNEKLFDKGD* | 602 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan10g0976 | 601 | SUPERFAMILY | HCP-like | 236 | 467 | - | - | |
| Lan10g0976 | 601 | PANTHER | LEAF PROTEIN-LIKE | 96 | 594 | - | - | |
| Lan10g0976 | 601 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 366 | 400 | IPR002885 | - | |
| Lan10g0976 | 601 | TIGRFAM | PPR: pentatricopeptide repeat domain | 264 | 296 | IPR002885 | - | |
| Lan10g0976 | 601 | TIGRFAM | PPR: pentatricopeptide repeat domain | 439 | 471 | IPR002885 | - | |
| Lan10g0976 | 601 | TIGRFAM | PPR: pentatricopeptide repeat domain | 333 | 366 | IPR002885 | - | |
| Lan10g0976 | 601 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 331 | IPR002885 | - | |
| Lan10g0976 | 601 | TIGRFAM | PPR: pentatricopeptide repeat domain | 369 | 401 | IPR002885 | - | |
| Lan10g0976 | 601 | TIGRFAM | PPR: pentatricopeptide repeat domain | 476 | 505 | IPR002885 | - | |
| Lan10g0976 | 601 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Lan10g0976 | 601 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 471 | 505 | IPR002885 | - | |
| Lan10g0976 | 601 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Lan10g0976 | 601 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 401 | 435 | IPR002885 | - | |
| Lan10g0976 | 601 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 96 | 594 | - | - | |
| Lan10g0976 | 601 | Pfam | PPR repeat | 334 | 357 | IPR002885 | - | |
| Lan10g0976 | 601 | Pfam | PPR repeat | 475 | 503 | IPR002885 | - | |
| Lan10g0976 | 601 | Pfam | PPR repeat | 228 | 249 | IPR002885 | - | |
| Lan10g0976 | 601 | Pfam | PPR repeat family | 365 | 410 | IPR002885 | - | |
| Lan10g0976 | 601 | Pfam | PPR repeat family | 260 | 309 | IPR002885 | - | |
| Lan10g0976 | 601 | Gene3D | Tetratricopeptide repeat domain | 116 | 250 | IPR011990 | GO:0005515 | |
| Lan10g0976 | 601 | Gene3D | Tetratricopeptide repeat domain | 251 | 326 | IPR011990 | GO:0005515 | |
| Lan10g0976 | 601 | Gene3D | Tetratricopeptide repeat domain | 465 | 537 | IPR011990 | GO:0005515 | |
| Lan10g0976 | 601 | Gene3D | Tetratricopeptide repeat domain | 331 | 464 | IPR011990 | GO:0005515 | |
| Lan10g0976 | 601 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 436 | 470 | IPR002885 | - | |
| Lan10g0976 | 601 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 331 | 365 | IPR002885 | - | |
| Lan10g0976 | 601 | MobiDBLite | consensus disorder prediction | 581 | 601 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan10g0976 | Lan-Chr10 | 14796203 | 14799593 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan10g0976 | 143 | 558 | Miscellaneous Gene Families | AT4G11690 | 24.945 | 1.47e-44 | 164 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan10g0976 | - | - | gmx:100793484 | 847.425 |