Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0854 ATGGCGCTTCATCTTTTTCTTCTTCGTCCTCCTTCTCTTCCTTTTCTCTTCCCTCTTCACTTTATGTCTTCTCGCTTTCTCTCCCCTTCTTCTTCTTCTTCTTCATTCCATTCTCTTTCTTATCCTCATTCTTCATCTTCATCTTCATCCTCATCTATTTCTTCTACTCACTCCCCTTTCTTCAAACCCAGGTTGAGTTTGCAGCTAAGAAAATCGTCAAGTTCCCATTTGGCAAGAAATGCACTCACTCCAAGGGCTTATATGTCATCCATTTCTGCAACTGAAGGTTTTCAAAAAAGTGAAAGTTCCAAAGCTTATGGTTCTGATCAAATTCAGGTACTTGAAGGCTTGGACCCTGTTAGAAAAAGGCCTGGAATGTATATCGGAAGCACAGGCCCGCGTGGGTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGATTTGCTTCTAAGATAGATGTTGTTTTACTTGCAGATGATTCTGTGAGCATCACTGACAATGGCCGTGGGATTCCTACCGACATGCATCCAGTTACAAAGAAATCTGCCTTGGAGACAGTGTTAACGGTCTTGCATGCTGGTGGAAAATTTGGTGGAGCCAATAGTGGCTACTCTGTTTCAGGAGGGTTACATGGTGTTGGTTTATCCGTAGTTAATGCATTGTCTGAGAAACTAGAGGTAACAATTTGGCGTGATGGATTGCAATACAAACAAAAGTATTCTCGTGGGAAGCCAGTAACAACGCTGATATGCAATGTGCTTCCAGATGAAGAGAAAGATCGTCAAGGGACATGTATCAGATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTGAGTTTGATCACAACACTATAGCTGGACGCATTAGGGAGTTGGCTTTCCTCAACCCAAAGCTTACCATTATTCTTACAAAAGAAGACAATGATCCAGAGAAGATTCAACATAATGAGTATTTCTTTGCTGGGGGATTAGTTGAATATGTTAAATGGCTTAACACTGATAAGAAAGCTGTTCATGATGTTCTGAGTTTTAGAAAAGAAACAGATGGAATCACAATTGATGTTGCTTTTCAATGGTGTGAGGATGCGTATTCAGATACAATACTCGGATATGCGAATAGTATACGGACTGTTGATGGTGGCACCCATATTGATGGCATGAAGGCTTCTATAACAAGAACACTGAATAATCTTGGAAAGAAGTCGAAAGTTATCAAGGAAAAGGATATTACTTTAAGTGGTGAGCATGTGAGAGAGGGTCTAACATGTGTTGTTTCAGTCAAGGTCCCAAATCCAGAGTTTGAAGGACAAACAAAGACAAGGTTGGGAAATCCAGAGGTGCGAAGAGTGGTTGACCAATCTATTCAAGAGTATCTTACTGAGTATTTGGAGTTGCATCCAGATGTTCTCGATTCTGTACTTTCTAAAGCTCTTAATGCTTTCAAGGCCGCTCTGGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAGAAGAGTGTATTAAGATCTTCATCTCTTCCCGGAAAATTAGCTGATTGTTCATCCTCAAATCCTGAAGATTGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGCTTCCAGGCCATTCTCCCTCTGAGGGGTAAGATTCTAAATATTGAAAGAAGGGATGAAGCAGCAATGTACAAAAATGAGGAAATCCAAAATCTTATTCTTGGTCTCGGTCTTGGTGTGAAGGGAGAAGATTTTAAAAAGGATGCACTCCGCTATCATAAGATTATTATATTGACTGATGCTGATGTAGATGGTGCCCACATCCGAACTCTACTACTGACATTTTTCTTTAGATATCAGAGAGCTTTGTTTGACCAAGGTTACATATATGTTGGTGTTCCACCATTGTACAAGGTTGTACGGGGAAAACAAATACACTATTGCTATAATGAATCGGATCTTAAAAAACTTCAAAGCTCCTTTCCTGCTAATGCATCATACAACATACAAAGGTTCAAAGGGCTGGGAGAGATGATGCCTTTACAGCTATGGGAGACAACCATGGATCCAGAGCGAAGGTTGTTGAAGCAGTTAAAGGTTGAAGATGCAGCTGAAGCAAATATCGTTTTTTCTTCCCTTATGGGTGCTCGGGTGGATGTTCGGAAGGAGCTGATACGAAATTCTGCAAACATGGTTGATGTTCAGCAGCTAGATATTTGA 2244 0.4091 MALHLFLLRPPSLPFLFPLHFMSSRFLSPSSSSSSFHSLSYPHSSSSSSSSSISSTHSPFFKPRLSLQLRKSSSSHLARNALTPRAYMSSISATEGFQKSESSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLLADDSVSITDNGRGIPTDMHPVTKKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSEKLEVTIWRDGLQYKQKYSRGKPVTTLICNVLPDEEKDRQGTCIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKLTIILTKEDNDPEKIQHNEYFFAGGLVEYVKWLNTDKKAVHDVLSFRKETDGITIDVAFQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASITRTLNNLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRRVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDQGYIYVGVPPLYKVVRGKQIHYCYNESDLKKLQSSFPANASYNIQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGARVDVRKELIRNSANMVDVQQLDI* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 135 150 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 170 183 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 215 229 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 378 391 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 530 544 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 597 613 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 615 632 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 635 647 - -
Lan10g0854 747 PRINTS DNA topoisomerase II family signature 677 693 - -
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 106 116 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 287 302 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 302 315 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 330 352 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 422 438 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 470 484 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 484 504 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 580 589 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 698 710 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PRINTS DNA gyrase subunit B signature 714 730 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 SUPERFAMILY Ribosomal protein S5 domain 2-like 331 501 IPR020568 -
Lan10g0854 747 Pfam DNA gyrase B 331 500 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 Pfam DNA gyrase B subunit, carboxyl terminus 673 733 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 SMART topII5 135 738 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 TIGRFAM gyrB: DNA gyrase, B subunit 106 747 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Lan10g0854 747 Gene3D - 330 508 IPR014721 -
Lan10g0854 747 Pfam Toprim domain 529 630 IPR006171 -
Lan10g0854 747 SUPERFAMILY Type II DNA topoisomerase 505 737 IPR013760 GO:0003918|GO:0005524
Lan10g0854 747 CDD HATPase_GyrB-like 136 320 - -
Lan10g0854 747 CDD TopoII_Trans_DNA_gyrase 330 484 - -
Lan10g0854 747 ProSiteProfiles Toprim domain profile. 528 643 IPR006171 -
Lan10g0854 747 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 106 320 IPR036890 -
Lan10g0854 747 Gene3D - 102 329 IPR036890 -
Lan10g0854 747 CDD TOPRIM_TopoIIA_GyrB 528 642 IPR034160 -
Lan10g0854 747 ProSitePatterns DNA topoisomerase II signature. 532 540 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lan10g0854 747 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 45 747 - -
Lan10g0854 747 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 133 280 IPR003594 -
Lan10g0854 747 SMART HKATPase_4 131 281 IPR003594 -
Lan10g0854 747 PANTHER DNA GYRASE SUBUNIT B 45 747 - -
Lan10g0854 747 Gene3D - 509 747 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0854 Lan-Chr10 12587026 12600397 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0854 K02470 - gmx:100779534 1196.42