Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan10g0739 | ATGGCAATTGCACGCACTGGAGTCTACGTTGACGATTATTTGGAGTATTCTAGTACATTGCCCGCTGAACTTCAAAGGCTGCTCAATACCGTCCGAGAACTCGATGAACGATCCCAATCTATGATAAATCAGACCGGGCAGCAAACAGAGTACTGTATCTCATCACATGGCTCTAAAAAGGGTAATCATGGTGGCCATAACTATAATAATTACAATTATGTGAATGAAGAAGACGATGCAACTATTGAGAAAATGCAAAAAGAAATCAAGGCAAATCAGGATAGTGCCTTAAGTCTATGTACTGAGAAGGTTTTGTTGGCACGACAAGCATATGAGCTGATAGATAGCCATATAAAACGACTTGATGAGGATCTAAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCAAGAGATGAACCAGCAATCCTCCCTCCATTGCCAATAGTCCCTAAACCTGAAAAACGCAGGCCCTCGTATGGAACACCTCAATCAAAGAGATTTGATTACAGGGATAGGGATTGGGATCGGGAGCGTGATCGGGACTTTGAGCTAATGCCTCCACCAGGAAGCCATAAAAAGGAATATGCAACTCCAATGGATGTTGATCAACCAATTGATCCAAACGAACCTAGATATTGTGTTTGCCATGAGGTGTCTTTTGGAGATATGATTGCTTGTGACAATGAAACTTGCCAAGGAGGTGAATGGTTCCACTATGTATGTGTTGGCCTAACACAAGAAACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAAATTACTGCCACAATGTCGAGGATGA | 813 | 0.4207 | MAIARTGVYVDDYLEYSSTLPAELQRLLNTVRELDERSQSMINQTGQQTEYCISSHGSKKGNHGGHNYNNYNYVNEEDDATIEKMQKEIKANQDSALSLCTEKVLLARQAYELIDSHIKRLDEDLNNFAEDLKQEGKIPRDEPAILPPLPIVPKPEKRRPSYGTPQSKRFDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPRYCVCHEVSFGDMIACDNETCQGGEWFHYVCVGLTQETRFKGKWYCPTCKLLPQCRG* | 271 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan10g0739 | 270 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 264 | IPR013083 | - | |
| Lan10g0739 | 270 | SMART | PHD_3 | 215 | 263 | IPR001965 | - | |
| Lan10g0739 | 270 | MobiDBLite | consensus disorder prediction | 161 | 175 | - | - | |
| Lan10g0739 | 270 | MobiDBLite | consensus disorder prediction | 135 | 175 | - | - | |
| Lan10g0739 | 270 | Coils | Coil | 24 | 44 | - | - | |
| Lan10g0739 | 270 | SMART | ING_2 | 9 | 128 | IPR024610 | - | |
| Lan10g0739 | 270 | Gene3D | - | 5 | 126 | - | - | |
| Lan10g0739 | 270 | CDD | PHD_ING | 215 | 262 | - | - | |
| Lan10g0739 | 270 | Pfam | Inhibitor of growth proteins N-terminal histone-binding | 9 | 128 | IPR024610 | - | |
| Lan10g0739 | 270 | CDD | ING_plant | 17 | 125 | - | - | |
| Lan10g0739 | 270 | ProSiteProfiles | Zinc finger PHD-type profile. | 213 | 265 | IPR019787 | - | |
| Lan10g0739 | 270 | PANTHER | PHD FINGER PROTEIN ING2 | 2 | 265 | - | - | |
| Lan10g0739 | 270 | MobiDBLite | consensus disorder prediction | 181 | 200 | - | - | |
| Lan10g0739 | 270 | PANTHER | INHIBITOR OF GROWTH PROTEIN | 2 | 265 | IPR028651 | - | |
| Lan10g0739 | 270 | SUPERFAMILY | FYVE/PHD zinc finger | 189 | 263 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan10g0739 | Lan-Chr10 | 9315488 | 9321031 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan10g0739 | K11346 | - | gmx:100787916 | 449.129 |