Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0714 ATGATCAGGATTAGATCAAAAGTACATGTTTTATCGGCTGTGGCACTACGTCTCAGCTACCATTTACTTCATGCTAATCACTATCAGAGAGTTCAGCAGCCCTTGATGAATGCAGCTTCCAATTTCTTGAACCCGTCAACAAAGTCTGACACTTTTTCAGCTCCATCACAATTTAGTTTCTCGGTCAGGCTCTTTTCTTCATCAATTGATGCCCCTGCGCCAGGATTGGATGATGAGGACGATAATGATGATGATGAGGATGGTAATGATGATGATCATGCCAATACTAGTCTCTTACATTTAAGAGATGATGGCCTTGCCCAAGATGTTAAAACCATTTTGGATATATTTCATGAACCGGGTTCTGGTCCATCTGAAATTAAGCGTAAGCTTGAGCATTGCAGTGTTAGGACATCCTTGGAGCTGGTTGTGGAGGTCCTTTCGAGAATTCGCAATGATTGGGAAACAGCTTTCACTTTTTTCTTGTGGGCTGGCAAGCAAAAAGGGTATGCTCATTCCATTCGCGAGTACCATTCAATGATCTCTATCCTCGGCAAGATGAGGAAGTTTGATACTGCTTGGAGCTTAATTGAGGAAATGAGAGGAGGTAGAACAGGTCCTTCGCTTGTAACCCCGCAAACTCTCTTGATTATGATCAGGAAATACTGTGCTGTACATGATGTTGGAAGGGCTATAAATACTTTCTATGCTCTTAAACGGTTTAACTTTCAAATTGGACTGGAAGAATTTCAAGGCCTTCTTTCTGCCCTTTGCCGGTACAAGAATGTGCAAGATGCTGAGCACCTTCTGTTCTGCAACCAAAATGTATTCCCATCTGACACCAAAAGCTTTAACATTATTCTGAATGGATGGTGTAATTTGATTGTTAGCACACGTCACGCAGAAAGAATTTGGCAGGAGATGAGCAAAAGAGGAATCCAACATGATGTTGTCTCTTATGCAAGTATCATATCTTGCTATTCAAAAACATCTAAACTTTACAAGGTGCTCAGGTTGTTTGACCAAATGAAGAAAAGGAATATCACTCCAGATAGGAAGGTCTATAATGCGGTCATTCACGCTCTTGCAAAGAGTAAGCTTGTGAAAGAAGCTATCAATCTCATTCGAACAATGGAAGAAAACAATGTTACTCCAGATGTTGTTACTTACAACTCCCTGATCAAGCCTCTCTGCAAAGCTCGCAAATTAGATCAGGCCGAAGAATTTTTTGATGAGATGTTGAAACGGGGTCTATCACCTACAATTCAGACTTTTCATGCTTTCCTACGCATGTTAAGGACCAAGGAAGAAATATATGGGATTTTAGACAACATGAGAAAGCTGGGTTGCTCTCCAACTATTGAGACCTACATAATGTTAATCAGAAAGTTTAGCCGTTGGCGCCAGCTTGACGATGTCTTCAAGGTATGGAATTTAATGAGGGAAGGTGGAATTGGCCATGACCGTAGCTCTTATATTGTACGGATTCATGGGTTATTTCTGAATGGAAAGCTGGAGGAAGCAAACAGATATTACATCGAGATGCAGGAGAAGGGCTTTCTCCCGGAACCGATGACGGAAAAAATGCTTCAGGCATGGATTTCTGGGAAACAATTAACAGATGGCCAGATGACAGAGTTAGAGAAAAATCAGTTGGAACTTGATACTCTGACAAAGAAAGTCAAGGCTGAACATAGTAAATTTGACAGGGAAAAAGATTTTCTACACCAACCTGAGATGAGAAGAGTAGTAAGAGAAGGGGGATTTTCTTTTCTGGAGCAGTAA 1785 0.4106 MIRIRSKVHVLSAVALRLSYHLLHANHYQRVQQPLMNAASNFLNPSTKSDTFSAPSQFSFSVRLFSSSIDAPAPGLDDEDDNDDDEDGNDDDHANTSLLHLRDDGLAQDVKTILDIFHEPGSGPSEIKRKLEHCSVRTSLELVVEVLSRIRNDWETAFTFFLWAGKQKGYAHSIREYHSMISILGKMRKFDTAWSLIEEMRGGRTGPSLVTPQTLLIMIRKYCAVHDVGRAINTFYALKRFNFQIGLEEFQGLLSALCRYKNVQDAEHLLFCNQNVFPSDTKSFNIILNGWCNLIVSTRHAERIWQEMSKRGIQHDVVSYASIISCYSKTSKLYKVLRLFDQMKKRNITPDRKVYNAVIHALAKSKLVKEAINLIRTMEENNVTPDVVTYNSLIKPLCKARKLDQAEEFFDEMLKRGLSPTIQTFHAFLRMLRTKEEIYGILDNMRKLGCSPTIETYIMLIRKFSRWRQLDDVFKVWNLMREGGIGHDRSSYIVRIHGLFLNGKLEEANRYYIEMQEKGFLPEPMTEKMLQAWISGKQLTDGQMTELEKNQLELDTLTKKVKAEHSKFDREKDFLHQPEMRRVVREGGFSFLEQ* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0714 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Lan10g0714 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Lan10g0714 594 PANTHER OS01G0816000 PROTEIN 53 584 - -
Lan10g0714 594 MobiDBLite consensus disorder prediction 74 91 - -
Lan10g0714 594 Pfam PPR repeat 491 520 IPR002885 -
Lan10g0714 594 Pfam PPR repeat 177 201 IPR002885 -
Lan10g0714 594 MobiDBLite consensus disorder prediction 72 96 - -
Lan10g0714 594 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 53 584 - -
Lan10g0714 594 Pfam PPR repeat family 385 432 IPR002885 -
Lan10g0714 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Lan10g0714 594 Pfam Pentatricopeptide repeat domain 303 362 IPR002885 -
Lan10g0714 594 Pfam Pentatricopeptide repeat domain 441 485 IPR002885 -
Lan10g0714 594 Gene3D Tetratricopeptide repeat domain 437 588 IPR011990 GO:0005515
Lan10g0714 594 Gene3D Tetratricopeptide repeat domain 273 436 IPR011990 GO:0005515
Lan10g0714 594 Gene3D Tetratricopeptide repeat domain 107 271 IPR011990 GO:0005515
Lan10g0714 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Lan10g0714 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 315 IPR002885 -
Lan10g0714 594 TIGRFAM PPR: pentatricopeptide repeat domain 354 387 IPR002885 -
Lan10g0714 594 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Lan10g0714 594 TIGRFAM PPR: pentatricopeptide repeat domain 177 201 IPR002885 -
Lan10g0714 594 TIGRFAM PPR: pentatricopeptide repeat domain 456 485 IPR002885 -
Lan10g0714 594 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Lan10g0714 594 TIGRFAM PPR: pentatricopeptide repeat domain 491 522 IPR002885 -
Lan10g0714 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0714 Lan-Chr10 8167086 8169431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0714 280 558 Glycosyltransferase AT1G05670 26.316 9.65e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0714 - - gmx:100812155 876.7