Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0701 ATGCAGAAAATGGATTCTTATTCTACGTTGACTCGGTGTCTAATAATTTTGGCATCACTCGCCTCTGTTGCACTCTGCACCAATCCACCTAGGCCAGTTGATGTACCATTCAGCAGAAACTATGTTCCAACATGGGCTTATGATCACATTAAATATTTCAATGGAGGTTCTGAGGTTCAGCTTCATCTTGACAATAACACTGGAACTGGCTTCCAGTCCAAAGGATCATACTTGTTTGGTCACTTCAGCATGAACATAAAGATGGTTCCTGGGGATTCAGCAGGGACAGTCACAGCTTTCTATTTATCATCCCAAAATTCTGAGCACGATGAGATAGATTTTGAGTTCTTGGGCAACAGAACAGGACAACCTTACATTTTACAAACAAACGTATTCACTGGTGGCAAGGGTGACAAGGAACAGAGAATATATCTCTGGTTTGATCCTACACTAAAGTACCATAGATACTCTATCCTATGGAACTTGTATCAGATTGTGTTACTTGTGGATAATATCCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGTGTAAAATTCCCCTTTAACCAACCCATGAAAATGTACAACAGTTTATGGAATGCTGATGATTGGGCTACAAGGGGTGGATTGGAGAAAACAGATTGGTCCAAAGCTCCATTCATAGCACAATATAAGGGCTTCCACATTGATGGTTGTGAAGCTTCTGTGGAAGCCAAGTTCTGTGCCACACAGGGCAAAAGATGGTGGGATCAACCTCAGTTCCAAGACCTTGATGCTTCTCAATGGAGATGGCTTAGGTGGGTGAGAAGGAAGTACACTATCTACAACTACTGCACTGATAAGACTCGTTACCCTCAACTACCCTCTGAATGCAAAAGAAACCGTGACATTTAA 897 0.4214 MQKMDSYSTLTRCLIILASLASVALCTNPPRPVDVPFSRNYVPTWAYDHIKYFNGGSEVQLHLDNNTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDKEQRIYLWFDPTLKYHRYSILWNLYQIVLLVDNIPIRVFKNSKDLGVKFPFNQPMKMYNSLWNADDWATRGGLEKTDWSKAPFIAQYKGFHIDGCEASVEAKFCATQGKRWWDQPQFQDLDASQWRWLRWVRRKYTIYNYCTDKTRYPQLPSECKRNRDI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0701 298 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 245 292 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lan10g0701 298 Gene3D - 23 298 - -
Lan10g0701 298 PIRSF EndGlu_transf 1 297 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lan10g0701 298 Pfam Glycosyl hydrolases family 16 38 218 IPR000757 GO:0004553|GO:0005975
Lan10g0701 298 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 296 IPR044791 GO:0004553
Lan10g0701 298 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 296 IPR013320 -
Lan10g0701 298 ProSitePatterns Glycosyl hydrolases family 16 active sites. 111 121 IPR008263 GO:0004553|GO:0005975
Lan10g0701 298 CDD GH16_XET 32 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lan10g0701 298 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 225 IPR000757 GO:0004553|GO:0005975
Lan10g0701 298 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 10 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0701 Lan-Chr10 7561285 7564040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0701 11 298 Glycoside Hydrolase AT5G13870 76.736 5.26e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0701 K08235 - gmx:100779122 554.288