Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0118 ATGAGTGACGAAGGAGAAAGGACTTGCCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAACACTTGAAACCATGCAAATGTGGTTATCAGATATGTGTCTGGTGTTGGCATCACATAATGGACATGGCTGAGAAGGATGACACAGAGGGGCGATGCCCTGCTTGTCGTTCTCCATATGACAAGAATAAGATTGTCGGAATGGCTGCAAACTGTGAGAGATTGGTAGCGGAAGTTCATATGGAAAAAAGGTTGAAGAACCAGAAAGCAAAATCTAAGTCATATGAAGGACGGAAGCAGCTCAGCAATGTGCGGGTGATTCAGCGGAACCTTGTTTACATTGTGGGATTGCCTCTTAATTTGGGAGATGAAGATCTTCTCCAGCGGCGAGAGTATTTTGGTCAATATGGGAAGGTCTTAAAAGTGTCGATGTCTCGGACGGCAGCTGGTGTTGTTCAGCAGTTTCCAAATAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCGGTCCGTTGCATTCAAAATGTAAATGGATTTGTTTTGGAGGATAGACCTTTAAGGGCTTGTTTTGGAACAACAAAATATTGTCATGCATGGCTCCGAAATATGCCTTGCAGCAATCCAGATTGTCTATATCTGCATGAGATTGGCTCCCAAGAAGATAGTTTCTCTAAAGATGAAATTAGAGGTCGTGTTCAACAAATTACTGGCGCTGCCAACAATATGCAACAACGGTCAGGGACTGTATTGCCTCCTCCCTTGGATGATTGCATGAATAACTCGCCAGGAAAACCCATTATGAAAAATGGTTCAAGTAGCTCGGCTAGCCTTGTAAGAGGTTCACCTCCTAATGGAAGCTCTGGCAGGCCTATGGCTCTTCCTGCTGCTGCCTGGGGTTCACGGGCTACCAATTGTCAGCCTGCTGCTGGAGTTACATTAGGCTCAAATGGCCCATCCAAGCCCAGATCCGATACAATCAGCAGTGCACTGTCGTGCTCCTTAGCTGTTGCAGACACAAATCTGGCTTCACTGCATATTGATGTGACAACGAGGCCTCTGTCCAGTGATGAGAGTCGTAGTATGACATCTAGCGTAAAAAACGAATCGTTGAAACCTGTTATACAGTACAATAGCGTGGATAGCAGTGATGGCGAAAAAACCTTACCCTCTGATGTTTCTCTTGCATCTTTAAATTTGAACAATCAGTTGTCTTCTCTATCATTAGCTGGAGATAGTGATAAAGGCAGTTGTACTTCAACAAACACGACAAATTCTATTGACATCACTGGACAACCATGCAGCTTTGGTCTTGAAGAAGCAATTATTACTACAACTGAACATTTTCATAATTTATCTTCTGAGTTATCGTCAATTAACAATGATAGAAGTGCCCGGAATGAACACTACAGCCTAACTAAACCTAGTACACCACCTTCTGATTCCGTCTTAGTCAAATATTCCCAGTCTCAAGGATTACAGATCAATTCTGACAAATTTGGAGATTCAATGATTACAAATGCAGCTGTATCAGCTGCCACATCAGATAATGGGGTTTGTAATTCAAAGGAATGGTGTGCTTTGAGATTTGATTCTCAACCCCTTGTATTATCAGGTAACGCTGAAGTGGAAGACGATGTAGCATCTTTTGATAATCAACGGCTCAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTGCCAAAGTCGTCTAGCTTCCTGCATGCCTCAAACTGTTATAATCCTCAGCTTCCTCAACATGGTGAACGTGTTGTTGCAAATGCTGGTTCCATATCTATGGCTGATAAAGTTGGGAATGATTCTGTATTGCATGCACCTGACATTTTATGCAATGGATACCCTAAAAAATTGGCAAGTATCAGCTCTTATAGTTTGTCTCATGATGAAGGAAACAAACAATGCAATGGAAGATTAGTTACTGAAGCTGTTAATACTGGAAGTGGTGCTGCTGTGGATAAGGGTGAGAGTACTATAATTTCAAATATATTGTCCATGGAATTCGATGGCTGGGCTGACTCACTAACATCACCTAAGAATTTGGCCAAACTGTTGGGTGACAACACTGATAACCAGAATGGTTCATTGAAGAATTCTAGTACCCGGAAAGTCCTAAGTAACAATCAATCAAGATTTTCTTTTGCAAGGCAAGAGGAATCCAACATTCATGCCTTTAATGTACATCCATCATACAATAGCAGCCAGCAATTTCCAAATAGCTGTTCACTCATGCAGGAATTTTCAGAAAGAGATGTGTCTATGGATAAGTTTGGTATTGCTAATGGCTTCCATGCCAATAGCCTTGAGGAATCAGAAATTCTACGCAATGGTCATTTTCTTGCTTCTCCTAATAGGCCTTCTGTTGTTTCAAGATCTCAAATTTCGGCGCCGCCAGGATTTTCAGTTCCAAGCAGGCTGCCTCCTCCTGGTTTTTCGTCTTATGAGAGAATGGGTCAGGCCGTTGACTCCTTTTCTGGGAATCGGTTGCTTGACCCTTCTTCCTTACGTAGTAACTCGTATCAGACTCCATCAACTGTAAATAATGGTGGTGCTGGAGACATTGAATTTATGGACCCTGCTATTTTAGCTGTTGGTAAGGGGAGACTGCATGGTGCAGCATTAATCAACCCAGTGTCGGACATGCGATCCAATTATCCTCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAAATACCTATGCAAAGATCTTTCTCACCACAGCAAAACCTTCGGTTTTCTGAATTTGAGAATAATTTTTCTCTGGTTGGTGATTCTTATGCCATTTCTTCGAGGTTAGATCAATCACAAATCAGTAATCAGGCCTCATATCCTCAGTTATCTATGCAGCAGTCTAGAAATGCAGCTTTGTCAAATGGGCAGTGGGATGCCTGGAATGAGGTGGAGAGTGGAAATACTTTGAATATGGCTGAACTTCTGAGAAATGAAAGACTTGGACTTAACAAGTTCTATAAAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGCAGATCTTTACAAAAGGACATTTGGGATTTGA 3069 0.4161 MSDEGERTCPLCAEEMDLTDQHLKPCKCGYQICVWCWHHIMDMAEKDDTEGRCPACRSPYDKNKIVGMAANCERLVAEVHMEKRLKNQKAKSKSYEGRKQLSNVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAVRCIQNVNGFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFSKDEIRGRVQQITGAANNMQQRSGTVLPPPLDDCMNNSPGKPIMKNGSSSSASLVRGSPPNGSSGRPMALPAAAWGSRATNCQPAAGVTLGSNGPSKPRSDTISSALSCSLAVADTNLASLHIDVTTRPLSSDESRSMTSSVKNESLKPVIQYNSVDSSDGEKTLPSDVSLASLNLNNQLSSLSLAGDSDKGSCTSTNTTNSIDITGQPCSFGLEEAIITTTEHFHNLSSELSSINNDRSARNEHYSLTKPSTPPSDSVLVKYSQSQGLQINSDKFGDSMITNAAVSAATSDNGVCNSKEWCALRFDSQPLVLSGNAEVEDDVASFDNQRLKDPEVVCRSYLPKSSSFLHASNCYNPQLPQHGERVVANAGSISMADKVGNDSVLHAPDILCNGYPKKLASISSYSLSHDEGNKQCNGRLVTEAVNTGSGAAVDKGESTIISNILSMEFDGWADSLTSPKNLAKLLGDNTDNQNGSLKNSSTRKVLSNNQSRFSFARQEESNIHAFNVHPSYNSSQQFPNSCSLMQEFSERDVSMDKFGIANGFHANSLEESEILRNGHFLASPNRPSVVSRSQISAPPGFSVPSRLPPPGFSSYERMGQAVDSFSGNRLLDPSSLRSNSYQTPSTVNNGGAGDIEFMDPAILAVGKGRLHGAALINPVSDMRSNYPPQLNYFENEARLQIPMQRSFSPQQNLRFSEFENNFSLVGDSYAISSRLDQSQISNQASYPQLSMQQSRNAALSNGQWDAWNEVESGNTLNMAELLRNERLGLNKFYKGYDDSKYRMPNSADLYKRTFGI* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0118 1022 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1022 IPR039780 GO:0004842|GO:0030014
Lan10g0118 1022 Gene3D - 111 192 IPR012677 -
Lan10g0118 1022 CDD RRM_CNOT4 105 204 IPR034261 -
Lan10g0118 1022 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Lan10g0118 1022 SMART rrm1_1 111 192 IPR000504 GO:0003723
Lan10g0118 1022 SMART rrm2_1 111 192 IPR003954 GO:0003676
Lan10g0118 1022 MobiDBLite consensus disorder prediction 267 286 - -
Lan10g0118 1022 MobiDBLite consensus disorder prediction 262 302 - -
Lan10g0118 1022 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1022 - -
Lan10g0118 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Lan10g0118 1022 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Lan10g0118 1022 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Lan10g0118 1022 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Lan10g0118 1022 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Lan10g0118 1022 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Lan10g0118 1022 SUPERFAMILY RING/U-box 3 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0118 Lan-Chr10 712486 721573 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0118 K10643 - gmx:100796804 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1694 8 23808872 23816756 Lan10g0118 10 712486 721573 PCT