Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0103 ATGGCTGCTCCACCAGCAAGGGCTCGTGCTGATTATGATTACCTCATCAAGCTTCTCTTGATCGGGGACAGTGGTGTTGGAAAGAGTTGCATTCTTCTGCGATTCTCTGATGGTTCTTTCACCACTAGTTTCATCACTACCATCGGCATTGATTTTAAGATAAGGACCATTGAGATGGATGGAAAACGGATCAAGCTTCAAATTTGGGATACTGCTGGCCAGGAGCGGTTTCGAACTATTACAACTGCTTACTACCGCGGTGCTATGGGCATATTGCTAGTCTATGATGTTACAGATGAATCATCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTGGGGAACAAAGCCGACATGGATGAAAGCAAAAGGGCTGTGCCTACCTCCAAGGGCCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCAATTGCAAAGGATATAAAACAAAGGCTTGCTGACACTGACACTAAGGCAGAGCCGGCAGGAATCAAAATCAACCAACAAGATCAGGCAGCAGGGGCAGGACAGGCTGCACAAAAATCTGCTTGCTGTGGTTGA 648 0.4398 MAAPPARARADYDYLIKLLLIGDSGVGKSCILLRFSDGSFTTSFITTIGIDFKIRTIEMDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDTKAEPAGIKINQQDQAAGAGQAAQKSACCG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0103 215 SMART arf_sub_2 1 181 - -
Lan10g0103 215 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Lan10g0103 215 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Lan10g0103 215 Gene3D - 9 214 IPR027417 -
Lan10g0103 215 ProSiteProfiles small GTPase Rab1 family profile. 11 214 - -
Lan10g0103 215 ProSiteProfiles small GTPase Ras family profile. 6 215 IPR001806 GO:0003924|GO:0005525
Lan10g0103 215 CDD Rab8_Rab10_Rab13_like 13 180 - -
Lan10g0103 215 PANTHER BNAA07G37610D PROTEIN 1 214 - -
Lan10g0103 215 SMART ran_sub_2 21 213 - -
Lan10g0103 215 SMART rab_sub_5 16 180 - -
Lan10g0103 215 SMART ras_sub_4 17 180 - -
Lan10g0103 215 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Lan10g0103 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 202 IPR027417 -
Lan10g0103 215 PRINTS Transforming protein P21 ras signature 16 37 - -
Lan10g0103 215 PRINTS Transforming protein P21 ras signature 39 55 - -
Lan10g0103 215 PRINTS Transforming protein P21 ras signature 57 79 - -
Lan10g0103 215 PRINTS Transforming protein P21 ras signature 119 132 - -
Lan10g0103 215 PRINTS Transforming protein P21 ras signature 155 177 - -
Lan10g0103 215 PANTHER LD44762P 1 214 - -
Lan10g0103 215 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0103 Lan-Chr10 601253 605052 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0103 K07901 - gmx:100780673 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0103 10 601253 605052 Lan3g0059 3 403576 407244 LSH
Lan10g0103 10 601253 605052 Lan7g0254 7 1603088 1606361 PCT
Lan10g0103 10 601253 605052 Lan13g0341 13 2240385 2244411 PCT
Lan7g0254 7 1603088 1606361 Lan10g0103 10 601253 605052 PCT
Lan13g0341 13 2240385 2244411 Lan10g0103 10 601253 605052 PCT