Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0098 ATGGCGTCCCAAGCATGCCTCCTCCTTCAAAAACAACTCAAAGATCTTTGTAAACACCCTGTTGATGGTTTTTCTGCGGGTTTGGTAGATGAAACCAATATTTTTGAATGGAGTGTTACCATTATTGGACCCCCAGATACCCTTTATGAAGGGGGATTTTTCAATGCCATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCGACTATCAAATTCACCTCAGAGCTATGGCATCCCAATGTGTATCCCGATGGGCGTGTTTGCATATCAATTCTTCATCCTCCTGGTGATGACCCGAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCACACAGTGGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGTCCCAATGATGAATCTCCAGCAAATGTTGAAGCTGCAAAGGAATGGAGAGAGACAAGAGATGAATTCAAGAAAAAGGTTAGTCGTTGCGTACGGAAGTCACAAGAAACATGGTGA 501 0.4331 MASQACLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTIKFTSELWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRETRDEFKKKVSRCVRKSQETW* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0098 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lan10g0098 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Lan10g0098 166 Gene3D Ubiquitin Conjugating Enzyme 2 165 IPR016135 -
Lan10g0098 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Lan10g0098 166 SUPERFAMILY UBC-like 4 162 IPR016135 -
Lan10g0098 166 SMART ubc_7 7 164 - -
Lan10g0098 166 CDD UBCc 17 159 IPR000608 -
Lan10g0098 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 164 - -
Lan10g0098 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0098 Lan-Chr10 575516 588807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0098 5 147 Miscellaneous Gene Families AT3G17000 27.815 4.50e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0098 K10575 - gmx:100500474 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0098 10 575516 588807 Lan8g1713 8 23955896 23962061 PCT
Lan10g0098 10 575516 588807 Lan13g0336 13 2210502 2215050 PCT
Lan8g1713 8 23955896 23962061 Lan10g0098 10 575516 588807 PCT
Lan13g0336 13 2210502 2215050 Lan10g0098 10 575516 588807 PCT