Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0560 ATGGGTTCATATACCCCAAAGAATATCCTCATTACTGGGGCAGCTGGATTTATTGCATCTCATGTTGCGAACCGCCTTGTCCGGAGCTACCCTGACTACAAAATTGTTGTCCTTGACAAACTTGATTACTGCTCAAATCTGAAGAATCTCATTCCTTCAAAATTATCACCCAACTTCAAGTTTGTGAAGGGAGATATTGGTAGTGCTGATCTTGTCAACTACCTTCTCATCACCGAGTCCATCGACACTATAATGCACTTTGCTGCACAAACTCACGTTGACAACTCGTTCGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTGCTGTTAGAAGCCTGCAAGGTAACTGGCCAGATCAGGAGGTTCATTCATGTGAGCACTGATGAGGTCTATGGGGAGACCGATGAGGATGCTGTTGTTGGAAACCATGAGGCTTCTCAACTTCTTCCGACAAACCCATACTCTGCGACGAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGTAGGTCATATGGTTTACCAGTTATCACGACTCGTGGAAACAATGTTTACGGGCCCAATCAGTTTCCTGAGAAGTTGATTCCGAAGTTCATCCTCCTGGCTATGCAAGGAAAGAATCTACCGATTCATGGGGATGGTTCTAACGTGAGGAGTTATTTATATTGTGAAGATGTTGCGGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGCCATGTTTACAATATCGGGACAAAGAAGGAAAGGAGAGTTATTGATGTGGCCAAAGATATATGCACACTATTCAAAAAGGACCCAGACGCTAGCATAAAATTTGTAGAGAACAGACCATTCAATGATCAAAGATACTTTCTCGATGATCAAAAGCTAAAGATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATTCACAGAATCCTGATTGGTGGGGTGATGTAACTGGAGCATTGATTCCTCATCCGAGGATGCTGATGATGCCTGGTGGCTTGGAGAGACACTTTGAAGGATCTGAAGATGAAAAGTCTGCATCATTTAGCTCAACTAATACCCGAATGGTGGTTCCGTCAACCAAGAACACTGGCACTCAGCAGAAACCCCCCTTTAAGTTCTTGCTCTATGGTAGAACTGGGTGGATTGGGGGTTTGCTGGGAAAGTTGTGTGAAAAGCAAGGGATTCCATATGAATATGGAAAAGGGCGCTTAGAGGATCGCACCTCGCTTATCGCTGATCTTCAGCATGTGAAGCCAACCCATGTTTTTAATGCTGCAGGAGTGACTGGCAGGCCAAATGTTGATTGGTGTGAGTCTCATAAAACAGAAACCATCCGCACCAATGTTGCCGGTACTCTAACATTGGCTGATGTCTGCAGAGAGCAAGGGATCTTGATGATAAATTTCGCTACTGGTTGCATATTTGAGTACGATGCAGCACATCCAGAGGGCTCTGGAATTGGTTATAAAGAGGAAGATAAGCCGAATTTCATTGGCTCTTTCTATTCTAAAACTAAAGCTATGGTTGAGGAGCTCTTGAGAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCGATTTCATCGGACTTGAGCAACCCACGCAACTTCATTACAAAGATTTCTCGTTATAACAAGGTAGTTAACATCCCAAACAGCATGACTATTTTAGATGAACTTCTACCTATTTCAATTGAGATGGCAAAAAGGAACTTGAAGGGAATCTGGAACTTCACAAATCCTGGGGTCGTGAGCCATAACGAGATCCTTGAGATGTACAGGGATTACATTGACCCTAACTTCAAGTGGACTAACTTCACACTTGAGGAGCAAGCCAAAGTTATAGTTGCTCCTAGAAGCAACAATGAGATGGATGGATCCAAATTGAAGAAAGAGTTCCCAGAATTGCTTTCCATCAAGGAATCACTTATCAAGTTTGTCTTTGAGCCAAACAAGAAATAA 2004 0.4351 MGSYTPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLIPSKLSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKNLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICTLFKKDPDASIKFVENRPFNDQRYFLDDQKLKILGWSERTTWEEGLKKTMDWYSQNPDWWGDVTGALIPHPRMLMMPGGLERHFEGSEDEKSASFSSTNTRMVVPSTKNTGTQQKPPFKFLLYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRTSLIADLQHVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGILMINFATGCIFEYDAAHPEGSGIGYKEEDKPNFIGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYIDPNFKWTNFTLEEQAKVIVAPRSNNEMDGSKLKKEFPELLSIKESLIKFVFEPNKK 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0560 667 Gene3D - 200 322 - -
Lal9g0560 667 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 666 - -
Lal9g0560 667 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Lal9g0560 667 Gene3D - 9 313 - -
Lal9g0560 667 Gene3D - 374 667 - -
Lal9g0560 667 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 333 IPR036291 -
Lal9g0560 667 MobiDBLite consensus disorder prediction 357 377 - -
Lal9g0560 667 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 666 - -
Lal9g0560 667 CDD dTDP_HR_like_SDR_e 385 657 - -
Lal9g0560 667 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Lal9g0560 667 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Lal9g0560 667 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 660 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0560 Lal-Chr9 3793382 3797437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0560 8 319 Miscellaneous Gene Families AT4G00110 27.246 9.61e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0560 K12450 - gmx:100785885 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0560 9 3793382 3797437 Lal9g0560 9 3793382 3797437 ECH