Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0547 ATGGCCAACAGTAACCTTCCTCGGCGAATCATCAAAGAAACCCAGCGTCTGCTCAGTGAGCCAGCACCTGGAATTAGTGCTTCCCCTTCAGAAGATAATATGCGATATTTCAATGTGATGATCCTTGGGCCAAGCCAGTCACCTTATGAAGGAGGAGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTCAGGTTTCTGACAAAAATATATCATCCGAACATTGATAAGCTTGGTAGGATATGTCTTGATATTCTGAAAGATAAATGGAGTCCTGCCCTTCAGATACGCACTGTTCTTTTGAGCATTCAAGCTCTTTTGAGTGCACCAAACCCGGATGATCCCCTTTCTGAGAACATTGCCAAGCATTGGAAATCTAACGAGGTCGAGGCTGTTGAAACAGCCAAGGAATGGACCCGATTATATGCTAATGGGGCTTGA 462 0.4394 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYANGA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0547 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
Lal9g0547 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Lal9g0547 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Lal9g0547 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Lal9g0547 153 SMART ubc_7 8 151 - -
Lal9g0547 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lal9g0547 153 SUPERFAMILY UBC-like 7 150 IPR016135 -
Lal9g0547 153 CDD UBCc 7 146 IPR000608 -
Lal9g0547 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0547 Lal-Chr9 3698011 3702669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0547 8 118 Miscellaneous Gene Families AT3G17000 29.060 7.93e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0547 K10580 - ini:109150576 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0547 9 3698011 3702669 Lal9g0547 9 3698011 3702669 ECH
Lal2g0631 2 3751747 3755813 Lal9g0547 9 3698011 3702669 LSH
Lal20g0372 20 2985872 2989742 Lal9g0547 9 3698011 3702669 PCT
Lal11g1462 11 17917286 17922083 Lal9g0547 9 3698011 3702669 PCT
Lal9g0547 9 3698011 3702669 Lal20g0372 20 2985872 2989742 PCT
Lal9g0547 9 3698011 3702669 Lal11g1462 11 17917286 17922083 PCT