Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0536 ATGAGAAGCATTTCAAAGACAACATACTTCAGTGTCATTCTTATAGTACTAGTAGCAGTTCATGGTGAGGGGCGTGCCCTTGGTATAAGTGCTACTGAGTTGGTTTCTGATGGAGTGCATGATATCCAAACTGAAAATTCTCACTTGCATCTCAAAGGGAGTGAGCCTTCTGGGGAGTACTGTGAGCAAATGTATGGTTTCTTGCCATGTTCCACTAACATTTTTGGTCACCTCTTCTTGATATTGGTATATGAGTATTTGTTATTCCATGGAGAATCATACTTGGCTGCTGGAGGTGAAAAGGTCTTTGAAATTCTTGGCCCTGGCATTTTTGGTTCTAGTGCCTTTGATCTCCTTGGTGCCCTTCCTGAGTCTCTAATTCTTCTTGTTACTGGACTCAACAGTGACAAAGAGACTGCACAAGAATATGCTTCCAGTGGCGTTGGATTGTTGGCTGGATCTTCCATTTTGCTTCTGACAGTAGTTTGGGGAACCTGTGTTATCATTGGAAGTCAAAATTTGAATGATGACCATAATCCTAGTGGATCTAACAGATCAAAATTATCAATAAAAGAATCACTCACTGGTTCTGGCCTGACCATGGATATAGACACAGTGAATATGTCAAGAATCATGGTTTTCTCAATTATACCACTCCTTATAATGCAGATTCCCACTTTATTCAGCCTCTCTTCCACACCTCGAGCTGTAACCTTGATGGTTTCTCTTATCATTGCTGTCATTTTTCTCATCTCCTACTTCGTATATCAGGTTTTTGAACCTCATATCGAGAAGACAAGACTAGAATACATAAAACATGATCATTTAATATTAAGGATATTCCAACATGTTAACAAGCAAACTCTTCAAAAGATCCTTGCTGAGGATGGAACTGCTAATGTTGCAGCCATAAATGGTCTATATCATGAAATAAGTGGTGGGGAGGACTTGTTAGCTTCTGACATTAAAGAGATGCTGCTTCAGAACAAAGAAAATATAGTAAACATCACAGAGGAACAAATAGAAGGCGTGTTAAAAATTTTCGACCGAAATGGCGACCAAGTAATATCTAGGGAAGAATTTGTGAATGGTTTAACAAATTATATTATCCAAACAAAGCGTGCTCTGGAGAGGAAGTACATCGCAAAAGAATCAATGAACAACTTGTATAAGTCATTTGTCAAGCCATGGATTGAACACACAAGAAGAGAGCGTAAATTGAAGGGACATATTATATCTGAAGTGTTAAACCATGCTCAGAGTGATATGGTTGGAAATCTTTGTAAAGACGATGGCACACCTAATGAAGATGCAATCAGAAGATTATTTCATCAAGTTGATAAGGATGGCGATGGTCATGTCTCAAAGTCAGAGTTAAAAATATTAGTGAGGAACATTAATCTTGGTGAGGTTGCAGATTCAGAAGAGGCAGTTACAAAAATTATTCATGAACTTGACCTTAACAGGGATGATGAAATCAGTGAGAATGAATTCGTTGAAGTGTTTACAAATTGGATAAATAGAAATTCGAGTAAAGCTCCTCACTTAGTACCCATGCCTCATCAAAATGAAGCCTGGGAAGAAGTTGAAAGCGTGGTAGAAGATAAGACAATCAAAGGAATAAAAGCTTGGTTGAGCGCTTTAGGATATGTGATATTGGGAATTACTATGTTATCTCTTCTTGCAGAGCCCTTAGTGCATAGTGTTCAAAACTTCTCTGAAAAAGCAGGAATCTCATCATTTTTCATCTCATTTATTGTTGTCCCCATTGCTACAAATTTTAGAGAAGCAACCACAGCAATAAGAGAAGCTAGCCATCAGAAGAGAGGCAATACCTCTCAAACTATTTATGAGATTTATGGATCAGTTTTCATGAACAATATTCTTGGCTTTGTGGTGATTTCAAGTCTAATATATATGAGAAATATCACTTGGGAATTCTCAGCAGATGTATTGGTTGTGGCAATTGTATGTACTGTGATGGGCGTTTCTGCAAGTTTTCGCTCCACTTTCCCTCTCTGGACATCTTTTCCTGCATATGCAATGTACCTTCTATCATTAGTTTTGATTTTTGTTCTTAAAGATGTTCTGCATTATGTTTAG 2103 0.378 MRSISKTTYFSVILIVLVAVHGEGRALGISATELVSDGVHDIQTENSHLHLKGSEPSGEYCEQMYGFLPCSTNIFGHLFLILVYEYLLFHGESYLAAGGEKVFEILGPGIFGSSAFDLLGALPESLILLVTGLNSDKETAQEYASSGVGLLAGSSILLLTVVWGTCVIIGSQNLNDDHNPSGSNRSKLSIKESLTGSGLTMDIDTVNMSRIMVFSIIPLLIMQIPTLFSLSSTPRAVTLMVSLIIAVIFLISYFVYQVFEPHIEKTRLEYIKHDHLILRIFQHVNKQTLQKILAEDGTANVAAINGLYHEISGGEDLLASDIKEMLLQNKENIVNITEEQIEGVLKIFDRNGDQVISREEFVNGLTNYIIQTKRALERKYIAKESMNNLYKSFVKPWIEHTRRERKLKGHIISEVLNHAQSDMVGNLCKDDGTPNEDAIRRLFHQVDKDGDGHVSKSELKILVRNINLGEVADSEEAVTKIIHELDLNRDDEISENEFVEVFTNWINRNSSKAPHLVPMPHQNEAWEEVESVVEDKTIKGIKAWLSALGYVILGITMLSLLAEPLVHSVQNFSEKAGISSFFISFIVVPIATNFREATTAIREASHQKRGNTSQTIYEIYGSVFMNNILGFVVISSLIYMRNITWEFSADVLVVAIVCTVMGVSASFRSTFPLWTSFPAYAMYLLSLVLIFVLKDVLHYV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0536 700 Pfam Sodium/calcium exchanger protein 548 691 IPR004837 GO:0016021|GO:0055085
Lal9g0536 700 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Lal9g0536 700 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Lal9g0536 700 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 393 511 - -
Lal9g0536 700 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 10 384 - -
Lal9g0536 700 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 541 698 - -
Lal9g0536 700 CDD EFh 439 503 IPR002048 GO:0005509
Lal9g0536 700 Pfam EF-hand domain pair 437 502 IPR002048 GO:0005509
Lal9g0536 700 Gene3D - 291 375 - -
Lal9g0536 700 Gene3D - 376 517 - -
Lal9g0536 700 ProSitePatterns EF-hand calcium-binding domain. 349 361 IPR018247 -
Lal9g0536 700 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Lal9g0536 700 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 10 384 - -
Lal9g0536 700 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 541 698 - -
Lal9g0536 700 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 393 511 - -
Lal9g0536 700 SMART efh_1 340 368 IPR002048 GO:0005509
Lal9g0536 700 SMART efh_1 477 505 IPR002048 GO:0005509
Lal9g0536 700 SMART efh_1 438 466 IPR002048 GO:0005509
Lal9g0536 700 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Lal9g0536 700 SUPERFAMILY EF-hand 334 503 IPR011992 -
Lal9g0536 700 ProSiteProfiles EF-hand calcium-binding domain profile. 336 371 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0536 Lal-Chr9 3597818 3602079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0536 389 693 EF-hand Containing Proteins AT1G53210 37.879 2.00e-59 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0536 - - gmx:100799062 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0536 9 3597818 3602079 Lal9g0536 9 3597818 3602079 ECH