Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0472 ATGGCAGGTCGTGGCAAAACCCTAGGATCTAGCAACGCCAAGAAGGCCACCTCACGAAGCAGCAAAGCCGGTCTTCAATTCCCCGTTGGTCGTATTGCCCGGTTCCTTAAGGCCGGAAAGTACGCCGAGCGTGTTGGCGCCGGTGCCCCTGTCTACCTCGCTGCCGTTCTTGAATATCTCGCCGCTGAGGTTCTAGAGTTGGCGGGAAATGCTGCAAGAGATAACAAGAAGACTAGAATTGTTCCCAGACACATTCAATTAGCAGTTAGGAACGATGAGGAACTGAGTAAGCTCCTTGGTGATGTGACTATTGCTAATGGTGGAGTAATGCCCAATATTCACAACTTGCTTCTCCCTAAGAAAGCTGGTTCCTCCAAAGGTGTTGCTGCTGATGATGAATAA 402 0.5025 MAGRGKTLGSSNAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKGVAADDE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0472 133 PANTHER HISTONE H2A.6 2 132 - -
Lal9g0472 133 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 SUPERFAMILY Histone-fold 9 122 IPR009072 GO:0046982
Lal9g0472 133 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Lal9g0472 133 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 PANTHER HISTONE H2A 2 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lal9g0472 133 MobiDBLite consensus disorder prediction 1 23 - -
Lal9g0472 133 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Lal9g0472 133 Pfam C-terminus of histone H2A 93 126 IPR032454 -
Lal9g0472 133 Pfam Core histone H2A/H2B/H3/H4 7 90 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0472 Lal-Chr9 3136957 3138084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0472 K11251 - gmx:100810491 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0472 9 3136957 3138084 Lal9g0472 9 3136957 3138084 ECH