Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0401 ATGGCTGCTATTGGCAAAGGAGGTGTTAGTTTTGAAGACTTGCTACCTGTGATGGCAAACAAGCTTGGTGGGGAGGGTCTAATAAAGGAGCTATGTAATGGGTTTGAGTTGCTTATGGATAAAGACAAAGGTGTTATAACATTAGATAGTTTGAGAAAAAATGCTGCTTTTCTTGGTCTTCAAGATTTGAAGGAAGATGAACTTGTGAGCATGATGAGTGAAGGAGATTTAGATGGAGATGGGGCTCTTACTCAGATGGAGTTTTGTGTTTTGATGTTCAGATTGAGCCCTGAATTGATGGAGGAGTCTTGGTTTTGTGTTGAAGAGGCTTTGCAATATGAGATCAACAATAACTCTAAATAA 363 0.3912 MAAIGKGGVSFEDLLPVMANKLGGEGLIKELCNGFELLMDKDKGVITLDSLRKNAAFLGLQDLKEDELVSMMSEGDLDGDGALTQMEFCVLMFRLSPELMEESWFCVEEALQYEINNNSK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0401 120 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Lal9g0401 120 SMART efh_1 67 95 IPR002048 GO:0005509
Lal9g0401 120 Gene3D - 9 120 - -
Lal9g0401 120 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Lal9g0401 120 PANTHER CALCIUM-BINDING PROTEIN KIC 1 118 IPR044205 GO:0005509
Lal9g0401 120 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 118 - -
Lal9g0401 120 Pfam EF-hand domain pair 43 94 IPR002048 GO:0005509
Lal9g0401 120 SUPERFAMILY EF-hand 5 100 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0401 Lal-Chr9 2663074 2663436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0401 10 118 EF-hand Containing Proteins AT5G54490 63.636 2.49e-44 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0401 K24345 - gmx:100527206 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0401 9 2663074 2663436 Lal9g0401 9 2663074 2663436 ECH