Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0375 ATGAATAACGCACACAAGCAACGAGTTGCATTTGTAATAGCTACTACTATAGCTGCTATCTCCATCTTCTTCACCGTACGACGTCGTATTAGTCGTCGTAAGCACAAGTCTTCTTCGAGTTCATGTTATTTACATTCCGAACCCAAACCACAGCGCGTGTTCAAGCGCGTCTTAGCGGATAACTCCTACGCTCAGTTCAAACACTTGAAGCTCAATGACTCCACTAGCGATGGTTATGGAGATCAACCTAAGTTTAGTGGTTTTCTTGCAGAGATTGCTTCACACTCACATCCATTTGAGGCAGAGATTAGGGCACTGCTTGAAAATCATCTGCCTCACATCGATCTCATGACTGAGATCACAGACTTGGAACTGAATGATACATATGTTTGGGTCGATACAGAGATGCAGTTAAAGGAACTGGTCGGTATGTTGAGCAAAGAGAGGTTCTTTGCTGTAGACACAGAACAACATGGCTTGCGATCTTTTCTAGGGTTTACAGCATTAGTTCAAATTTCTACACAGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTAATGGGAATCCTTCGCCCTGTTTTTGCCAATCCTTCTATTTGTAAAGTCTTCCATGGGGCTGACAATGATGTTATCTGGCTACAGAGGGATTTCCATATATATATCGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGCTCTCAAAACCACAGAAATCACTTGCTTATTTACTCGAAACTTACTGCAGTGTGACAACAAATAAATCATTTCAGCGTGAAGACTGGAGACAGCGCCCCCTCTCAGCGGAAATGGTAGAATATGCACGTACAGATGCACACTATTTGTTGTATATTGCTAACTGTTTGATCACCGAGCTCAAAGAACTGGACAGTGAAGACTCTTGTTCCAATGACAAATACCATTTTGTTCTTGAGGCTACTCGGCGTTCAAACATGATTTGCTTGCAACTTTTCTCAAAAGAGAGTGAGGCATCTCCGGGAGAATCTGCTGCGTCATCATTATTTTCACGTCATGTGAGCAGTGAAGGTTTTCCTTCAATTTCCAATGAAACCCAGTTTCAGGATATTGTGAGGCAACTCTGCACATGGAGAGATCTGATGGCTCGGATTCATGATGAGAACTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTAGCAAGTCAGCCTTCAGCAAGTCCCTCTGAAATATACAGCATCATAGCTAAAGCTGATGTCAATGTGGAAGCGGGCCCCAATGCTTTCAACCCTTACCCATCTCCTGTTGTTTGCAGCCACCTGAGTGATATTTGTCATATACTTGCAAATGAGTTGGTTAGCCATGGTGATATCTATTCGGTGATTCTTCAGAAGAGCCTAGGTAAATATGGAAGTTGTCCACTTTCTATATTTAATTATGCTTTGTTGATTAACAGTAACCCGAGACCTACTTTAACCTATAAACACTCTGGCCTAAAAAATCCTAAACGAATTTCCCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCATGTAAATCTCCCGTTTATCATAATTGCCGGATATTTGCTAATGATGGAAGGTTGCTTTGTTATTGTGATCGGAAGAAGCTTGAATGGTACCTTAGCCGTGATCTCGCAAAAGTTGTTGAGGAGGACCCACCAGCCATAATGCTTCTTTTTGAACCCAAAGGTCGCCCAGAGGATGAAGACAACGACTTTTATATCCAGAGTAAGAAAAACGTGTGTGTCGGGTGTGGTGAAGGAAATCACTACTTGCGGTACCGAATAATCCCATCGTGTTACAGAGTGCATTTCCCTGAGCATTTGAAAAGTCATCGTTCTCATGATATCGTCTTACTTTGTGTGGACTGCCATGAAGTTGCCCATGCTTCTGCAGAAAAGTATAAGAGAAAAATAGCTTCTGAATTTGGGATTCCTCTCTACGTTCGTAGAGTTATCCATCCAGGACAAGAGATTGAAGAACAGACAGAGGAGGGAGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTCTGCGCCATGGACCAAGAATGCCTCCCAGTCGCCGTGAAGAACTGACTAAGATTGTGAAGAGATATTATGGAGGGAAAGAGATATCTGAGGAAGATCTGGAAAGAGCTTTGTTAGTTGGCATGAGTCCTCATGGGAAAAGAAAGTTTGAAAAGAAGAGAGGGAAAACATTAAGACATTCTATGGGGAGTACTGCTGCAGATCCAGGACAGGAGAATCATGCTTGTTGCACAACCACAATGAGTAGCATGAACATATCAAAAGTTGATGCTCCTAATGGTTCATATGCAAATGAAGAAACAAGAAAGGAAGTCGATAGAGAAATTTTTATAGCAAAGCATGATTTTGGAAATCCCTCTTTAACTTCTGATCTTGTGGTTGATGGAGCTGTCTCTGCTGCTTTAAATGGAAATACAAACACTGTTAAAACTACGGATTATAACGGAAGCAATGATTTTGCTGTAAATGTTGATGATATCTGTCAGAGTAGAAGGCAGCCAGATGAAATTAGTGACTTGACCTGTCCCCCCATAGATGAAAAACCAACACAAACTAAACTTAATTCAAAACTATCACTCTTGGGACACGGGCCACATGGCAAACAAGTAGTAGAACATTTACTGAAAGAATACGGTGAAGATGGCATTCGACAGTTTTGTCAAAGATGGAGACAAGTTTTTGTTGAATCTTTAAAGCCACGTTTTCTTCCTGCTGGCTGGGATGTTAAACACAGTGGAATAAGGGACTTCGGCGAGTTCAGTGTATACAATCCTCATAAAAGGGAGGCTGCTGCTGCTAATACCTAG 2862 0.4158 MNNAHKQRVAFVIATTIAAISIFFTVRRRISRRKHKSSSSSCYLHSEPKPQRVFKRVLADNSYAQFKHLKLNDSTSDGYGDQPKFSGFLAEIASHSHPFEAEIRALLENHLPHIDLMTEITDLELNDTYVWVDTEMQLKELVGMLSKERFFAVDTEQHGLRSFLGFTALVQISTQEKDYLVDTIALHDLMGILRPVFANPSICKVFHGADNDVIWLQRDFHIYIVNLFDTSKACEVLSKPQKSLAYLLETYCSVTTNKSFQREDWRQRPLSAEMVEYARTDAHYLLYIANCLITELKELDSEDSCSNDKYHFVLEATRRSNMICLQLFSKESEASPGESAASSLFSRHVSSEGFPSISNETQFQDIVRQLCTWRDLMARIHDENLKYVLSDQAIVALASQPSASPSEIYSIIAKADVNVEAGPNAFNPYPSPVVCSHLSDICHILANELVSHGDIYSVILQKSLGKYGSCPLSIFNYALLINSNPRPTLTYKHSGLKNPKRISRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLSRDLAKVVEEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNVCVGCGEGNHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHASAEKYKRKIASEFGIPLYVRRVIHPGQEIEEQTEEGGVSPLQLRTAAMALLRHGPRMPPSRREELTKIVKRYYGGKEISEEDLERALLVGMSPHGKRKFEKKRGKTLRHSMGSTAADPGQENHACCTTTMSSMNISKVDAPNGSYANEETRKEVDREIFIAKHDFGNPSLTSDLVVDGAVSAALNGNTNTVKTTDYNGSNDFAVNVDDICQSRRQPDEISDLTCPPIDEKPTQTKLNSKLSLLGHGPHGKQVVEHLLKEYGEDGIRQFCQRWRQVFVESLKPRFLPAGWDVKHSGIRDFGEFSVYNPHKREAAAANT 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0375 953 SUPERFAMILY HRDC-like 362 412 IPR010997 GO:0000166|GO:0044237
Lal9g0375 953 Pfam HRDC domain 364 411 IPR002121 GO:0003676
Lal9g0375 953 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 947 IPR045092 GO:0000175|GO:0000467
Lal9g0375 953 Gene3D - 48 333 IPR036397 GO:0003676
Lal9g0375 953 PANTHER PROTEIN RRP6-LIKE 3 2 947 - -
Lal9g0375 953 Gene3D HRDC domain 353 453 IPR044876 -
Lal9g0375 953 SMART 35exoneu6 129 297 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lal9g0375 953 MobiDBLite consensus disorder prediction 731 757 - -
Lal9g0375 953 SUPERFAMILY Ribonuclease H-like 50 307 IPR012337 -
Lal9g0375 953 Pfam 3'-5' exonuclease 129 296 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0375 Lal-Chr9 2491011 2498884 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0375 K12951 - gmx:100791485 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0375 9 2491011 2498884 Lal9g0375 9 2491011 2498884 ECH