Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0335 ATGAGAGAGGAGGAAAAAGAGGTGTCCGTTTTGGCCATTCTTGTGACCCTTTTCAGAAAATCATTGATGGCTTGTAACAATGTTGGTAGGAGGGAGCTATGTGCTATGGAGATTGGATGGCCCACTAACGTGCGCCATGTTGCGCATGTTACCTTTGATAGATTCAATGGCTTCTTAGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCAGAAGGCCCCCCAGTGCTAGTGCTACTGTTTTTGGAGTTTCAACCGAATCCATGCAATTATCATATGGGACAAGAGGGAACAGTGTTCCAACAATTCTGTTACTAATGCAAAGGCGCTTGTATGCTCAAGGAGGGTTACAGGCAGAAGGGATTTTCAGAATTAATGGAGACAATAGTAAAGACGAATACTATAGGGAACAATTAAATAGGGGATTGGTACCAGATGACATTGATGTACATTCTTTGGCAGGACTTATTAAGGCTTGGTTTAGGGAAATGCCTGTAAGTGTTCTGGATTCTTTATCACCAGAGCAGGTAATGCAATCCCAGATTGAAGAGGATTGTGCTGAACTAGTGAGGCAACTACCTCGCACTGAAGCTTCCCTTCTGGACTGGGCTATCAATCTGATGGCTGATGTTGTCCAACACGAACATCTGAATAAGATGAATGCTCACAACATCGCCATGGTTTTCGCACCAAACATGACCCAGATGGAAGACCCTATGAGCGCATTGATGTATGCAGTTCAAGTAATGAACTTTTTGAAGACACTTATATTAAGGACACTGCGGGAAAGAAAGGATTCTGTGGTAGAAACATCTCCTGGATTTTGTTTAGAGCCTTCTGATGACAATGAGGACCATAGTGACCTATTTTACTCTTTCCAACAAGATGCAACTACAGAAATAGAAGAGGCTAGGGAAACCTTTGTTTATGAGAAAGATGTATTAGAATGTTCCCTTCAAAACATAAATTCAAGTGAAGCAAAATGTAGCAGTTTGGTGAGGTCCTCCTATGAGAATCTAATATGGAATGAAGATTTCTGTTTTTGGTTTCCACCCAAAGGAAAGGTTGGGAAGAGTAAGAGTGGCCAACCAGGGAGTTCAAAGCTTCATGAAGACGACGTCGTTTTCTTCACAAATGATTATTACAATACTCAACATAACCACAATTCCTCATCCATTAACCACCACCATAAGAGTTTCCCCTTTACCCCTCCCGATTCATTCGGTATCCTCGCTGCTCTCCCTGAAAACGAAACGTCTTCTAACCTCCGAAACGGTTCACAACTCTTCCATAATCATAAGGCCTCAATTTCATCTTCATCTTCCACTTCGTCTTCTTCTTCCTCCTCACGCCTCATTCCTAGGCCTCCGTCTCAGGATAGAAACTCATCTTCCTCCTCTTCGTTCTCCATCAAGTTCCACCACCAGTCGGCGCCGGTGAATGTTCCGATTCTGTCGGAGGAGATGATGAAGGCGAGGCGGAGGCACCGCGAATTCGATGAACATAGCGATGAAGAGGAACAGGAAGAGGAGATGCTGCCGCCGCATGAGATTGTGGCGAGGAACTCGGCGCAGTCGCCGATGCTTGCGTGTTCGGTGCTGGAAGGGGCGGGGAGGACGCTGAAGGGAAGGGACTTGCGCCGAGTGAGGAATGCTGTTTGGCGCCAAATAGGTTTCCTTGATTGA 1683 0.4528 MREEEKEVSVLAILVTLFRKSLMACNNVGRRELCAMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASATVFGVSTESMQLSYGTRGNSVPTILLLMQRRLYAQGGLQAEGIFRINGDNSKDEYYREQLNRGLVPDDIDVHSLAGLIKAWFREMPVSVLDSLSPEQVMQSQIEEDCAELVRQLPRTEASLLDWAINLMADVVQHEHLNKMNAHNIAMVFAPNMTQMEDPMSALMYAVQVMNFLKTLILRTLRERKDSVVETSPGFCLEPSDDNEDHSDLFYSFQQDATTEIEEARETFVYEKDVLECSLQNINSSEAKCSSLVRSSYENLIWNEDFCFWFPPKGKVGKSKSGQPGSSKLHEDDVVFFTNDYYNTQHNHNSSSINHHHKSFPFTPPDSFGILAALPENETSSNLRNGSQLFHNHKASISSSSSTSSSSSSSRLIPRPPSQDRNSSSSSSFSIKFHHQSAPVNVPILSEEMMKARRRHREFDEHSDEEEQEEEMLPPHEIVARNSAQSPMLACSVLEGAGRTLKGRDLRRVRNAVWRQIGFLD 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0335 560 Pfam Senescence regulator 367 560 IPR007608 -
Lal9g0335 560 PANTHER MKIAA1688 PROTEIN 2 327 IPR044785 GO:0005096
Lal9g0335 560 SUPERFAMILY GTPase activation domain, GAP 78 257 IPR008936 GO:0007165
Lal9g0335 560 Gene3D CRIB domain 34 67 IPR036936 -
Lal9g0335 560 ProSiteProfiles Rho GTPase-activating proteins domain profile. 83 268 IPR000198 GO:0007165
Lal9g0335 560 CDD CRIB 36 76 - -
Lal9g0335 560 CDD RhoGAP 100 256 - -
Lal9g0335 560 Pfam RhoGAP domain 101 234 IPR000198 GO:0007165
Lal9g0335 560 SMART PBD_5 38 72 IPR000095 -
Lal9g0335 560 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 2 327 - -
Lal9g0335 560 Pfam P21-Rho-binding domain 37 63 IPR000095 -
Lal9g0335 560 Gene3D Rho GTPase activation protein 71 267 IPR008936 GO:0007165
Lal9g0335 560 ProSiteProfiles CRIB domain profile. 38 51 IPR000095 -
Lal9g0335 560 SMART RhoGAP_3 97 260 IPR000198 GO:0007165
Lal9g0335 560 MobiDBLite consensus disorder prediction 433 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0335 Lal-Chr9 2229814 2233901 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0335 - K20642 ccaj:109798318 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0335 9 2229814 2233901 Lal9g0335 9 2229814 2233901 ECH
Lal2g0358 2 2140841 2141539 Lal9g0335 9 2229814 2233901 LSH