Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0323 ATGTATAGCAATTTCAAAGAGCAAGCAATTGAATACGTGAAACAAGCCGTACAAGAAGATAATGCAGGAAACTACGCTAAAGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACTCACCTCAAGTACGAAAAAAACCCTAAGATCAAGGAAGCAATCACTCAGAAATTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGCCCTCGACGATGGTGGGCCTGGCCCAGCATCTAACGGTGATGCTGCTGTTGCTACCAGGCCCAAGACAAAGCCCAAGGATGGGGAAGGAGGGGAAGGGGAGGATCCGGAACAGGCCAAGCTCAGGGCTGGTCTTAACTCTGCGATCATAAGGGAGAAACCTAATGTTAATTGGAATGATGTTGCTGGGTTGGAGAGCGCGAAACAGTCGTTGCAGGAGGCGGTTATCTTGCCTGTTAAGTTTCCTCAGTTCTTCACAGGTAAAAGACGACCCTGGAGGGCATTTTTGTTGTATGGACCACCAGGAACTGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCCACTTTTTTCAGTATATCTTCATCAGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCTCGAGACAGTGCACCATCTATCATATTTATTGATGAAATAGACTCTTTATGTGGTCAACGTGGTGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTTTGGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTCGTTCTTGCAGCAACAAATACACCTTATGCTCTAGACCAGGCAATAAGGAGGCGTTTTGATAAGCGTATTTATATTCCACTACCAGATGTGAAGGCTCGCCAACACATGTTCAAGGCAAGGGCAATATGCGTGTTTATGGTGCATCTAGGAGATACTCCCCATAGCTTGACTGAAGGTGATTTTGAGCACCTAGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATGTAGCTGTCTGTGTGAAAGATGTTTTATTTGAACCTGTTCGCAAGACTCAAGATGCCATGTTTTTCTTTAAGAATCATGACGGTATGTGGGTCCCATGTGGACCAAAGCAACAGAGTGCAGTTCAAATTACAATGCAGGACCTAGCTACACAAGGACTTGCTTCTAAGATCCTTCCGCCACCAATATCCAGAACAGATTTTGACAAGGTGCTTGCCAGACAAAGGCCCACAGTAAGCAAAAGTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA 1326 0.4548 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAALDDGGPGPASNGDAAVATRPKTKPKDGEGGEGEDPEQAKLRAGLNSAIIREKPNVNWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVKARQHMFKARAICVFMVHLGDTPHSLTEGDFEHLARKTEGFSGSDVAVCVKDVLFEPVRKTQDAMFFFKNHDGMWVPCGPKQQSAVQITMQDLATQGLASKILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0323 441 Pfam Vps4 C terminal oligomerisation domain 374 438 IPR015415 -
Lal9g0323 441 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Lal9g0323 441 Gene3D - 298 421 - -
Lal9g0323 441 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Lal9g0323 441 MobiDBLite consensus disorder prediction 91 109 - -
Lal9g0323 441 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lal9g0323 441 Gene3D - 125 429 IPR027417 -
Lal9g0323 441 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 441 - -
Lal9g0323 441 CDD AAA 133 296 - -
Lal9g0323 441 MobiDBLite consensus disorder prediction 71 109 - -
Lal9g0323 441 SMART smart 2 79 IPR007330 -
Lal9g0323 441 Gene3D - 6 75 - -
Lal9g0323 441 PANTHER AAA DOMAIN-CONTAINING 1 441 - -
Lal9g0323 441 SMART AAA_5 162 298 IPR003593 -
Lal9g0323 441 CDD MIT_VPS4 4 77 IPR045253 -
Lal9g0323 441 SUPERFAMILY MIT domain 2 81 IPR036181 -
Lal9g0323 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0323 Lal-Chr9 2134102 2138831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0323 161 362 Calmodulin-binding Proteins AT3G56690 35.294 2.60e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0323 K12196 - csv:101218878 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0323 9 2134102 2138831 Lal9g0323 9 2134102 2138831 ECH
Lal25g0234 25 1615727 1620710 Lal9g0323 9 2134102 2138831 PCT
Lal10g1151 10 18201211 18205127 Lal9g0323 9 2134102 2138831 PCT
Lal8g0182 8 1224064 1228189 Lal9g0323 9 2134102 2138831 PCT
Lal9g0323 9 2134102 2138831 Lal25g0234 25 1615727 1620710 PCT
Lal9g0323 9 2134102 2138831 Lal10g1151 10 18201211 18205127 PCT
Lal9g0323 9 2134102 2138831 Lal8g0182 8 1224064 1228189 PCT