Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0234 ATGTACAGCAATTTCAAGGAACAAGCAATCGAGTACGTGAAACAAGCCGTACATGAAGACAATGCTGGAAACTACGCAAAAGCTTTCCCTCTATACATGAACGCTTTGGAATATTTCAAAACTCATCTCAAATACGAGAAAAACCCTAAGATCAGAGAAGCTATTACTCAGAAATTCACCGATTACCTTCGCCGTGCTGAGGAAATCAGAGCTGTACTCGATCAAGGTGGGCCCGGCCCCGCCTCTAACGGAGACGCTGCTGTTGCTACTCGGCCCAAGACCAAGCCCAAGGATGGTGGTGGTGAAGGAGATGGCGAGGAGGCGAAGCTTCGGGCCGGGCTGAATTCGGCGATCATTAGAGAAAAACCGAATGTTAATTGGAATGATGTTGCTGGATTGGAGAGTGCTAAACAGGCTTTGCAGGAGGCTGTTATTTTACCTGTCAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCGTGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACAGGGAAATCATATTTAGCCAAGGCTGTTGCTACAGAAGCTGACTCCACATTTTTCAGTATTTCTTCATCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCTCGAGAGAGTGCCCCTTCTATCATATTTATTGATGAAATAGATTCCCTATGTGGACAGCGTGGAGAAGGCAATGAAAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTTCAGATGCAGGGCGTTGGAAACAATGATCAGAAAGTTCTCGTACTTGCAGCCACAAACACACCCTATGCTTTGGACCAGGTGCATCTAGGAGATACTCCTCATAACTTGACTGAAAGTGATTTTGGACACTTGGCTGGAAAGACAGAAGGGTTTTCTGGTTCAGATATATCTGTTTGTGTGAAGGACGTTTTATTTGAACCTGTTCGCAAAACACAAGATGCCATGTTCTTCTTTAAGAATACTGAGGGTATGTGGATTCCGTGTGGACCAAAGCAACAGGGTGCAGTACAAATCACAATGCAAGATCTTGCTGCGCAAGGACTTGCTTCTAAGATTCTTCCACCTCCCATTACAAGAACTGATTTTGACAAGGTACTCGCTAGACAAAGGCCTACAGTAAGCAAAGGTGACCTTGAGGTTCATGAGAGATTCACCAAAGAGTTTGGAGAGGAGGGTTGA 1221 0.4439 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTDYLRRAEEIRAVLDQGGPGPASNGDAAVATRPKTKPKDGGGEGDGEEAKLRAGLNSAIIREKPNVNWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQVHLGDTPHNLTESDFGHLAGKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNTEGMWIPCGPKQQGAVQITMQDLAAQGLASKILPPPITRTDFDKVLARQRPTVSKGDLEVHERFTKEFGEEG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0234 406 MobiDBLite consensus disorder prediction 73 107 - -
Lal25g0234 406 PANTHER AAA DOMAIN-CONTAINING 280 406 - -
Lal25g0234 406 PANTHER AAA DOMAIN-CONTAINING 1 280 - -
Lal25g0234 406 SUPERFAMILY MIT domain 2 81 IPR036181 -
Lal25g0234 406 SMART AAA_5 160 301 IPR003593 -
Lal25g0234 406 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 280 406 - -
Lal25g0234 406 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 280 - -
Lal25g0234 406 MobiDBLite consensus disorder prediction 91 107 - -
Lal25g0234 406 Pfam ATPase family associated with various cellular activities (AAA) 165 280 IPR003959 GO:0005524|GO:0016887
Lal25g0234 406 CDD AAA 131 279 - -
Lal25g0234 406 Pfam Vps4 C terminal oligomerisation domain 339 403 IPR015415 -
Lal25g0234 406 Gene3D - 282 382 - -
Lal25g0234 406 Gene3D - 122 280 IPR027417 -
Lal25g0234 406 SMART smart 2 78 IPR007330 -
Lal25g0234 406 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lal25g0234 406 Gene3D - 6 75 - -
Lal25g0234 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 385 IPR027417 -
Lal25g0234 406 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0234 Lal-Chr25 1615727 1620710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0234 159 327 Calmodulin-binding Proteins AT3G56690 32.487 8.85e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0234 K12196 - gmx:100788150 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0234 25 1615727 1620710 Lal25g0234 25 1615727 1620710 ECH
Lal25g0234 25 1615727 1620710 Lal10g1151 10 18201211 18205127 LSH
Lal25g0234 25 1615727 1620710 Lal8g0182 8 1224064 1228189 LSH
Lal25g0234 25 1615727 1620710 Lal9g0323 9 2134102 2138831 PCT
Lal9g0323 9 2134102 2138831 Lal25g0234 25 1615727 1620710 PCT