LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g0298	ATGGCATCAACTTTACCTTCTCTCTCCTCAACCTCTTATTCACTCTTGACTCACACATTTACCGCTAACTCAAATGGACCCAACAAGAGTGCGGGCTTTTTGGTTTTCGCTCAAAAGAAGACAAAGAAAATTCGAAAGATAATATTGAAGGAAGATGTGGACTTTTTGGGAAAGAAAGGTTCACTTGTTGATGTGAGGGCTGGGTTTTTCAGAAATTTTCTGCATCCCTCTGGAAAGGCTTCGATTGTCACTCCTCAACTGCTCAAGGAAATGAGGGTAGAAGAAGAAAGAATTGATGCGGAGAAAAGGCGGGTATTAGAAGAGGCACAACAACTTGCTCTAGTTTTCGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGCGGTAAAGGGAAACAAATTTTTGGAAGTGTCACAGCTCAAGATCTTGTTGACATAATCAAGGCACAGCTTCAGAGGGAGGTGGACAAGAGAATTGTTGAGCTTCCAGAAATCAGGGAAACAGGAGAATACGTTGCAGAGTTAAAGCTTCACCCGGAAGTTACAGCTAGAGTGAGGGTGAATGTTTTTGCTAACTAA	579	0.4249	MASTLPSLSSTSYSLLTHTFTANSNGPNKSAGFLVFAQKKTKKIRKIILKEDVDFLGKKGSLVDVRAGFFRNFLHPSGKASIVTPQLLKEMRVEEERIDAEKRRVLEEAQQLALVFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVELPEIRETGEYVAELKLHPEVTARVRVNVFAN	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g0298	192	Pfam	Ribosomal protein L9, N-terminal domain	46	91	IPR020070	-
	Lal9g0298	192	Gene3D	-	106	192	IPR036791	-
	Lal9g0298	192	PANTHER	50S RIBOSOMAL PROTEIN L9, CHLOROPLASTIC	5	192	-	-
	Lal9g0298	192	PANTHER	50S RIBOSOMAL PROTEIN L9	5	192	IPR000244	GO:0003735\|GO:0005840\|GO:0006412
	Lal9g0298	192	Hamap	50S ribosomal protein L9 [rplI].	45	192	IPR020594	GO:0003735\|GO:0005840\|GO:0006412
	Lal9g0298	192	Pfam	Ribosomal protein L9, C-terminal domain	107	190	IPR020069	-
	Lal9g0298	192	SUPERFAMILY	L9 N-domain-like	46	100	IPR009027	-
	Lal9g0298	192	TIGRFAM	L9: ribosomal protein bL9	46	191	IPR020594	GO:0003735\|GO:0005840\|GO:0006412
	Lal9g0298	192	ProSitePatterns	Ribosomal protein L9 signature.	57	84	IPR020070	-
	Lal9g0298	192	Coils	Coil	88	108	-	-
	Lal9g0298	192	Gene3D	-	46	105	IPR036935	-
	Lal9g0298	192	SUPERFAMILY	Ribosomal protein L9 C-domain	104	191	IPR036791	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g0298	Lal-Chr9	1913268	1915842	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g0298	K02939		-	gmx:100500390	293.508

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal9g0298	9	1913268	1915842	Lal9g0298	9	1913268	1915842	ECH
	Lal2g0317	2	1892043	1897846	Lal9g0298	9	1913268	1915842	LSH