Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0275 ATGGCTATGGTTGTGGCTCATCACAGGGAAAGTAGCAGCAACAACAGTGGTAGCATTGACAAGCACCTTGATTCAATTTCTGGGAAATATGTACGGTACACTGCTGAACAAGTTGAAGCTTTGGAAAGGGTTTATGCTGAATGCCCCAAACCTAGCTCCCTTAGGAGGCAACAGTTAATCAGAGATTGCCCCAATCTTTCAAATATTGAGCCCAAGCAAATCAAGGTTTGGTTTCAGAATAGAAGGTGTAGAGAAAAGCAGAGAAAAGAAGCTTCACGGCTTCAGACGGTGAATAGGAAACTTTCAGCAATGAACAAGTTGTTGATGGAAGAAAATGATCGGTTGCAGAAGCAGGTATCACAGCTTGTGGGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTACAACAGCAGCAACTACAGATGCTAGTTCTGATTCGGTGGTTACTACTACTCAGCATTCTATGAGAGATGCTAATAACCCTGCTGGGCTCCTATCGATTGCAGAGGAGACCTTGACAGAGTTCCTTTCCAAGGCTACAGGAACAGCTGTTGACTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTTGCAGTGGAGTAGCAGCTAGAGCCTGCGGTCTTGTTAGTTTAGAACCTATGAAGATTGTGGAGATCCTAAAAGATCGTTTATCTTGGTTTCGGGACTGTCGGAGCCTAGAAGTTTTCACAATGTTCCCTGCTGGAAATGGTGGGACCATTGAACTTGTTTACACACAGACATATGCTCCAACAACTCTGGCTCCTGCCCGGGATTTCTGGACTCTAAGATACACCACAACTTTGGAAAATGGCAGTCTCGTGGTTTGCGAGAGATCACTGTCTGGTTCTGGCACTGGCCCTAATTCAGCTGCCGCTGCTCAGTTTGTCAGAGCCGAAATGCTTCCTAGTGGCTACTTGATTCGACCGTGTGAGGGTGGAGGGTCAATCATCCACATTGTGGACCACCTAAATCTTGAGGCATGGAATGCACCAGAAGTGCTGCGACCTCTTTATGAATCATCAAAAGTGGTAGCTCAGAAAATGACCATTGCAGCACTTCGGTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTATATGGATTGGGTAGGCAGCCAGCTGTTTTGCGAACTTTCAGCCAAAGATTGAGCAGAGGCTTCAATGATGCTGTAAATGGATTCAATGATGATGGATGGACTGTACTGAACTGCGATGGTGCTGAAGATGTAATTATTGCAGTTAATTCAGCCAAGAATTTGAATGGCACTTCTAATCCATCAAGTTCCTTTACATTCCTTGGAGGTGTTCTCTGTGCAAAAGCTTCTATGTTGATCCAAAATGTCCCTCCTGCAGTTTTGATTCGCTTTCTGAGGGAGCACCGCTCGGAGTGGGCTGATTTTAATGTTGATGCTTATGCTGCCGCATCACTGAAATCTGGTACCTATGCGTATCCAGGAATGAGACCTACTAGATTCACTGGCAGTCAAATAATCATGCCCCTTGGTCATACAATTGAACATGAAGAGATGCTTGAAGTTATTCGGCTTGAAGGTCACTCCCTTGCTCAGGAAGACACTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGAATTGATGAGAATGACACTGGGGCTTGTTCTGAGCTCATATTTGCTCCAATCGATGAAATGTTTCCTGATGATGCTTTGTTGGTGCCTTCTGGATTCCGCATCATTCCATTGGCTTCAAAACCAGGTGATAAAAAGAATACAATATCTACTAATCGGACTCTGGATTTGACATCTGGTCTTGAAGTAGGCCCAATGACAGTTCATGGTGCAGATGCATCATCTAGTCAAAACGCTCGATCAGTGTTGACTATTGCCTTCCAGTTTCCTTTCGACAGCAATTTGCAAGATAATGTTGCTATCATGGCACGTCAATATGTTCGCAGTGTAATTTCCTCTGTGCAGAGGGTTGCCATGGCTATTTCCCCATCTGGTATAAGCCCAGACTTACTGAGATCAGATTCTCTTGTTGGTGATTTGATGCTGAAACATCTGTGGCATCATCAGGATGCCATTTTGTGCTGTTCAGTGAAGTCGCTGCCAGTGTTCATCTTTGCAAATCAAGCTGGCCTTGACATGCTAGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGACGAGTCTGGACGCAAGACATTGTGTACAGACTTCGCCAAGTTGATGCAGCAGGGGTCTGCTTATTTGCCAGCTGGGATCTGCATGTCGACAATGGGGCGACATGTTTCATATGAACAAGCCATAGCATGGAAAGTGCTTAATGCAGAAGATAATGATGTTCATTGCTTGGCTTTTTCTTTCATAAATTGGTCATTTGTTGAGGCTATATTAGACAACGGTAACTTTTCCTTGGAAGATCTTCTCGACGAAGAGGAAATAATCCAAGAATGCAAGGCCTTAAACACCCGTCTTATCAACTTTCTGAGAGATAGAGCTCAGGTTGAACAATTGCTACGCTACATCATCGAAGAACCGCCAGAAGATGCTGAACACAAACGGGTCTTCAAGTTTCCATTCATTTCCTGTGAGATCTTTACATGTGAAATTGATGTCATTTTGAAGACTTTGGTTGATGAAGAAGAGCTCATGAACTTATTATTCTCCTTCTTGGAGCATGACCGATCTCATAGTTCCTTGTTGGCTGGGTACTTCAGCAAGGTTGTTGTTTCCCTAATGATGCGAAAGACAGTGCCACTTATGAATTATGTTCAAGCCCATCAGCATGTTTTTCGCCAACTAGTTGACTTGATAGGAATTACATCCATTATGGAGGTTTTGGTTCGATTAGTAGGTGCTGATGACCATGTATATCCCAACTTTATTGATGTGATGCAATGGTTGGCTGAGAGCAACCTGCTGGAGATGATTGTTGATAAACTAAGTCCATCTAGTCCTCCTGAAGTTCACACCAATGTAGCGGAAACATTATGTACAATAACTAGGGTTGCATCATCTACTCTAGCAATTAAACTTTCAAGTCCAAGTTTTGTTGCAAAAATTTTGGGTTATGCAGTGGAAGATTCACGATCAAAGTCTAACCTTGTGAACTCACTTTCGGTGTGTATTTCTATGTTGGATCCCAAAAGATCAGCTGTTTCATCTTCATTTTTTCATTCATACCGAAGTCAAAACATGTATGACCCACCGATTCCTGTAAACCCTGATACTATTGGTGCAATGCTCCTTAAACTTAGTGAGTTGATTGCTCTTTTGTATGTGTCATCCGATGAAAAAGTATTGCCTACAACCTATGGCGAATTAAGACCTCCACTTGGAAGGCATCGATTAAAGATCGTGGAGTTCATTGGTGTACTTATAAAAACCGGAAATGAAGTGGCAGAAAAAGAATTGGTTAACTCTGGGACCATTCGACGAGTCATTGATCTTTTCTTCGAGTATCCATACAATAACGCATTGCACCATCATGTAGAAAGCATCCTATTATCATGTTTAGAGAGCAAAACTGAAGCCATTGTCGATCATCTTCTTCGAGAATGTGATTTAATTGGGAGATTTCTCCAAGCAGATAAGAATTGTCTTCTTTCCGCTGAAAGCAATCAGCCAACATTAGCTGCTGCTGGAAAACGGGCACCACGGGCAGGAAACATTGGACATATTACTCAAATTGTCAATAAACTTGTTCACTTTTCTCTTAACCGAAGCCACATACTGGCATGTCTTCAGGGAAATAATGAGTGGAATGAATGGCAAGCTACGGTTCTTCAGGAGCGTAATGTGGTTGAGAATGTTCATCGTTGGTCGTGTGGACGTCCAACTGCATTGCAAGACAGGATGAGGGATAGTGATGATGATGACCTTCATGACAGAGACTATGATGTCACAGCTTTAGCAAATAATTTGAGCCAGGCTTTTGGATACAAAATTTATGGGAACGAGGACAATGAAGAGACACATGACAGTATTGATCGTGATGAAGAGGATGTCTACTTTAATGATGATTCTGCTGAAGTAGTGATATCGTCCTTGAGACTCAGCGATGATCAAGGGAGTAACCTGTTTACAAATTCCAACTGGTTTGCGTTCCAAGATAATATAATTGGTGATGCACCTAGGGACAACACATTATCCTCAGAGATGATGGATGACATAAACTTGAATGGAACTGCAACTCGTGGTAGCAACATTAGTAACAATGGGGTAGTAGTGGAAGAAGAATTGATTGGCAGCAAAAATACTGTGAATGGTACATCTAGCCAAAGCACAAACTTCTTGAGTGGATTAACCGCTAGCAATTCAATGAATGGAGGTGCTTTAGACTTTGAAAATGATAAGGCAAGCACTTCACATGATATGGGATTCTTCGGATTTGAGGCACCAGACAATGGGCCCTTGTTTGGGGAAAGGCCTTCACCTGATTGGGTGGGATGTGGTGGACCATCAAATATACAAGTTGCTGGGTCAAGCCTGAATCCTTTTTTGGATCATGATGAGCCTGCTAGTAATTTGTCTAGTAGTCTTCAAGTAGGCAGCCCCAATCTGAGTTATCCTTCAAATGAGGAATTCATATCTTCTAATGGATTTCCGACTACTAGTGATTCGATCGAGGGGGATGGGGACTCAAGTCAAAGGTCAGTACCAGTTCCCTCCTTATTTGAAGAGGATGTTGAATTTGTAGGTGTAGAATTAGAAGGTACTGAGAAAGCGATGGAACAGGCTCTCAAAGAAGGGATAGTTGGAGAAGCCGGACCATTGAAAAGAAACATAGCCCCAAAAGTTGCAGAAAAGGAAAATTCTGTAGAGGACGATCCTGGACTGAAGGAGTTCAATGATGCAAATTACTGGAGGGTTGATCAAGAGGTTTCTGTTCTGGAGTATTGA 4968 0.4271 MAMVVAHHRESSSNNSGSIDKHLDSISGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRDCPNLSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVGENGFMRQQLHTTTAATTDASSDSVVTTTQHSMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPMKIVEILKDRLSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGTGPNSAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNAPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVIIAVNSAKNLNGTSNPSSSFTFLGGVLCAKASMLIQNVPPAVLIRFLREHRSEWADFNVDAYAAASLKSGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDTFVSRDIHLLQICSGIDENDTGACSELIFAPIDEMFPDDALLVPSGFRIIPLASKPGDKKNTISTNRTLDLTSGLEVGPMTVHGADASSSQNARSVLTIAFQFPFDSNLQDNVAIMARQYVRSVISSVQRVAMAISPSGISPDLLRSDSLVGDLMLKHLWHHQDAILCCSVKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKTLCTDFAKLMQQGSAYLPAGICMSTMGRHVSYEQAIAWKVLNAEDNDVHCLAFSFINWSFVEAILDNGNFSLEDLLDEEEIIQECKALNTRLINFLRDRAQVEQLLRYIIEEPPEDAEHKRVFKFPFISCEIFTCEIDVILKTLVDEEELMNLLFSFLEHDRSHSSLLAGYFSKVVVSLMMRKTVPLMNYVQAHQHVFRQLVDLIGITSIMEVLVRLVGADDHVYPNFIDVMQWLAESNLLEMIVDKLSPSSPPEVHTNVAETLCTITRVASSTLAIKLSSPSFVAKILGYAVEDSRSKSNLVNSLSVCISMLDPKRSAVSSSFFHSYRSQNMYDPPIPVNPDTIGAMLLKLSELIALLYVSSDEKVLPTTYGELRPPLGRHRLKIVEFIGVLIKTGNEVAEKELVNSGTIRRVIDLFFEYPYNNALHHHVESILLSCLESKTEAIVDHLLRECDLIGRFLQADKNCLLSAESNQPTLAAAGKRAPRAGNIGHITQIVNKLVHFSLNRSHILACLQGNNEWNEWQATVLQERNVVENVHRWSCGRPTALQDRMRDSDDDDLHDRDYDVTALANNLSQAFGYKIYGNEDNEETHDSIDRDEEDVYFNDDSAEVVISSLRLSDDQGSNLFTNSNWFAFQDNIIGDAPRDNTLSSEMMDDINLNGTATRGSNISNNGVVVEEELIGSKNTVNGTSSQSTNFLSGLTASNSMNGGALDFENDKASTSHDMGFFGFEAPDNGPLFGERPSPDWVGCGGPSNIQVAGSSLNPFLDHDEPASNLSSSLQVGSPNLSYPSNEEFISSNGFPTTSDSIEGDGDSSQRSVPVPSLFEEDVEFVGVELEGTEKAMEQALKEGIVGEAGPLKRNIAPKVAEKENSVEDDPGLKEFNDANYWRVDQEVSVLEY 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0275 1655 MobiDBLite consensus disorder prediction 1 20 - -
Lal9g0275 1655 SMART START_1 167 377 IPR002913 GO:0008289
Lal9g0275 1655 SMART HOX_1 26 92 IPR001356 GO:0003677
Lal9g0275 1655 CDD START_ArGLABRA2_like 162 378 - -
Lal9g0275 1655 Coils Coil 94 125 - -
Lal9g0275 1655 Gene3D - 23 95 - -
Lal9g0275 1655 SUPERFAMILY Homeodomain-like 28 91 IPR009057 -
Lal9g0275 1655 Pfam Homeodomain 29 87 IPR001356 GO:0003677
Lal9g0275 1655 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Lal9g0275 1655 ProSiteProfiles 'Homeobox' domain profile. 24 88 IPR001356 GO:0003677
Lal9g0275 1655 Pfam START domain 168 375 IPR002913 GO:0008289
Lal9g0275 1655 Gene3D - 203 383 IPR023393 -
Lal9g0275 1655 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 688 816 - -
Lal9g0275 1655 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 688 - -
Lal9g0275 1655 CDD bZIP 81 120 - -
Lal9g0275 1655 Pfam MEKHLA domain 689 815 IPR013978 -
Lal9g0275 1655 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 688 816 IPR044830 GO:0003700
Lal9g0275 1655 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 688 IPR044830 GO:0003700
Lal9g0275 1655 CDD homeodomain 29 89 IPR001356 GO:0003677
Lal9g0275 1655 Pfam SIT4 phosphatase-associated protein 933 1158 IPR007587 GO:0019903|GO:0043666
Lal9g0275 1655 Pfam SIT4 phosphatase-associated protein 1159 1292 IPR007587 GO:0019903|GO:0043666
Lal9g0275 1655 MobiDBLite consensus disorder prediction 1547 1574 - -
Lal9g0275 1655 SUPERFAMILY Bet v1-like 167 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0275 Lal-Chr9 1701897 1718443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0275 1 816 Homeobox Transcription Factor Family AT5G60690 78.286 0.0 1360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal9g0275 SAPS 6.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0275 K09338 - gmx:100804870 1474.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0275 9 1701897 1718443 Lal9g0275 9 1701897 1718443 ECH
Lal1g0382 1 2312859 2322357 Lal9g0275 9 1701897 1718443 LSH
Lal2g0296 2 1727442 1737919 Lal9g0275 9 1701897 1718443 LSH
Lal8g0148 8 1002923 1012724 Lal9g0275 9 1701897 1718443 PCT
Lal9g0275 9 1701897 1718443 Lal8g0148 8 1002923 1012724 PCT