Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0217 ATGTTGTCTGAATTGGGAAGAAGACCGATGCTTGGGAACAAGGAGGGTACTTTTGGTGATGAATTGGAGAAGGAGTTAGGGATGTTGCTTCGTGGGCAACATAGACAGGAAAGTGATGATTGGGAAAGAGAACTCAATATTTTCAGAAGTGGATCAGCGCCTCCAACTGTTGAAGGTTCTCTTAATGCAGTTGGAGGATTATTTGGTGGTGGTGCTGAGGCTGAGGCTGAGGCTGTTACTGCTTCCTTATCTGAGGAAGAACTTAGGTCTGATCCTGATTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCTAGACTTCCACCTCCTTTGTTATCAAAAGAGGATTGGAGGTTTGCTCAAAGACTTAAAGGTGGAGGAGCTTCAGTTCTTGGTGGAATCGGAGATAGGAGGAAAGTGAACATAACTGATGATAACGGTGGTAGATCGCTGTTTTTGACCCCTCCAGGTTTTAACATGAGGAAACAAGAGAGTGAGTTGGATAATGAAAAAACAGGAGGAGGATCAACTGAGTGGGGTGGTGATGGACTGATTGGTTTCCCTGGCCTAGGGCTTGGGACCAAACAAAAGAGCCTCGCTGAAATTTTCCCGGATGACATGGGGCTTAACACTCCTATCACAGGCCTTCCTTCTCGTCCTAGCAGTCGTAATGCATTTGATGAAGCTGAGTTGGCTCATATACGCCATGGTTCTCCAACCACTGATGCTTTAAAGTCACCTGCAGCTCAAACTATTGGCTTACCAGCTTCATATTCATATGCTGCTGCACTAGGAGGATCTTCTTTGTCAAGAAGCGCCACTCCTGATCCTCAAATTGTTGCTAGGGCTCCCAGTCCTTGCCTCACACCTATTGGTGGCGAGAGAACTGTTGCTGCAGACAAGAGAGGCGTTGCCAGTCCGGATTTATTTCGCAATGTTTCCTCTGGCATCAATGAGTCATCCGATCTTGTGTCTGCATTGTCGGGTCTGAACCTGTCCAGAGACAATATATTATATGGTGAAAAGCATTTGCCATCCCAGGTTGAATCAGATGTTGATAATCACCAGAGATATCTTTTCGGTATGCAAGGTGGTCAAGATCATGGCAAGCAACATGCATATTTAACGAAGACTGAATCAGGTCAGATGCAAAACTCAGGCAAGCTTAGTGGGAGTGGGTCAGACCTCAACAACCCATCCTTCGATAGGCGAGTTGAGCTACAAAAATATAATGTTCGTTCCAGTAATTCATATTTCAAAGGATCGCCTACCTCCAATTATAGTGGAGGAAGCAGTTTTCCGACTCAATACCAGCCTTTAGATGGAACAAGCTCACCATTTACTAACTATGGCTTGAATGGCTATGTTGGAAACCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACAGGTAATATGCCACCCCTCTATGAAAATGTTGCTGCAGCATCAGCAATGGGAGGCCCTGGAATGGACTCGAGGGTTCTTGGAGGTGGTTTAGGTCAGGGATCTAATGTGCATAGTCTTGGTAGAATGGGAAATCAAATTGTGGGTGGTGGTCTTCAGTCTTCTTTTGTTGATCCTATTTATCTACCATACTTGAGGACATCCGAGTATGCAGGACAACTTGGGGGGCTTAATGACCCTTCGGTGCACAGGAACTACTTAGGCGATTCATACATGCTTGACCTTCAGAAAGCTTATCTTGGGTCTCTGCTCTCACCTCAGAAGTCCCAATACAATGTTCCACTGGTTGGTAAATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCAGGCATATGGTGTGGGCTTATCTTACCCAGGAAGTCCAATGGCAAACCCTGCTGTGTCTAATTCTCCTGTTGGATCTGCAAGTCCTATTAGGCACAATGAACTGAATATGCGTTTTGCTACTGGAATGAGGAATTTAGCTGGGGTTATGGGACCTTGGCATGCAGATGCTGGGATGATGGGTGAAAGCTTTGCTTCTTCTCTGTTGGAAGAGTTCAAAAACAATAAAACTAAGTGTTTCGAACTCTCTGAACTTGCTGGCCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATGAGGAAATCATGCCACATGCGCTTGCTTTGATGACTGATGTCTTCGGCAATTATGTGGTTCAAAAGTTCTTTGAGCATGGACTTTCATCCCAGAGAAGAGAATTAGCAAACAAGCTTGTAGGCCATGTTCTGAATCTTAGCCTTCAAATGTATGGTTGTCGGGTCATCCAGAAGGCCATCGAAGTTGTTGATTTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGACGGTAATATCATGCGCTGCGTACGTGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTTCCTGAAGATGCAATTCACTTTATTGTCGCAACTTTTTTTGATCAAGTTGTGACACTTTCAACCCATCCATATGGTTGTAGGGTCATACAGAGAGTACTGGAACATTGCAAAGACGCTACAACAGAGCAGAAAGTTATGGATGAGATTTTAGGGGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTACTCGAACATGGGAAACCTCACGAGCGTTCTGCTATAATAAAGGAGTTAGCAGGCAATATAGTTCAAATGAGTCAACAGAAGTTTGCCTCTAATGTTGTAGAGAAATGTTTGAGCTTTGGAGGTCCTTCTGAACGACTATTACTAGTGAATGAAATGCTTGGCTCCACAGATGAAAATGAACCTCTTCAGGCCATGATGAAAGATCAATTCGCAAATTATGTTGTACAAAAGGTGCTGGAAACTTGTGAGGACCAACAACGTGAGCTGATTCTCTCACGAATCAAGGTTCATCTGAACGCATTAAAGAAGTACACCTATGGTAAACATATTGTCGCGCGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCCCAATCTCCTCAACCTACTTAG 3063 0.4378 MLSELGRRPMLGNKEGTFGDELEKELGMLLRGQHRQESDDWERELNIFRSGSAPPTVEGSLNAVGGLFGGGAEAEAEAVTASLSEEELRSDPDYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLKGGGASVLGGIGDRRKVNITDDNGGRSLFLTPPGFNMRKQESELDNEKTGGGSTEWGGDGLIGFPGLGLGTKQKSLAEIFPDDMGLNTPITGLPSRPSSRNAFDEAELAHIRHGSPTTDALKSPAAQTIGLPASYSYAAALGGSSLSRSATPDPQIVARAPSPCLTPIGGERTVAADKRGVASPDLFRNVSSGINESSDLVSALSGLNLSRDNILYGEKHLPSQVESDVDNHQRYLFGMQGGQDHGKQHAYLTKTESGQMQNSGKLSGSGSDLNNPSFDRRVELQKYNVRSSNSYFKGSPTSNYSGGSSFPTQYQPLDGTSSPFTNYGLNGYVGNPALASLMTNQLGTGNMPPLYENVAAASAMGGPGMDSRVLGGGLGQGSNVHSLGRMGNQIVGGGLQSSFVDPIYLPYLRTSEYAGQLGGLNDPSVHRNYLGDSYMLDLQKAYLGSLLSPQKSQYNVPLVGKSGGSNHHGYYGNQAYGVGLSYPGSPMANPAVSNSPVGSASPIRHNELNMRFATGMRNLAGVMGPWHADAGMMGESFASSLLEEFKNNKTKCFELSELAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYEEIMPHALALMTDVFGNYVVQKFFEHGLSSQRRELANKLVGHVLNLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIHFIVATFFDQVVTLSTHPYGCRVIQRVLEHCKDATTEQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGNIVQMSQQKFASNVVEKCLSFGGPSERLLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPT 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 829 865 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 757 792 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 685 720 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 721 756 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 793 828 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 866 901 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 902 937 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 944 979 IPR001313 GO:0003723
Lal9g0217 1020 SMART pum_5 829 864 IPR001313 GO:0003723
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 938 979 IPR001313 GO:0003723
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 902 937 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Nucleic acid binding protein NABP 283 684 IPR012940 -
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 866 901 IPR001313 GO:0003723
Lal9g0217 1020 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 665 1005 IPR033133 GO:0003723
Lal9g0217 1020 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1013 - -
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 793 828 IPR001313 GO:0003723
Lal9g0217 1020 CDD Pumilio 681 1001 IPR033712 GO:0003723
Lal9g0217 1020 MobiDBLite consensus disorder prediction 147 181 - -
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 685 720 IPR001313 GO:0003723
Lal9g0217 1020 SUPERFAMILY ARM repeat 668 1002 IPR016024 -
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 689 723 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 725 758 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 872 903 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 761 794 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 952 981 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 906 940 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 804 827 IPR001313 GO:0003723
Lal9g0217 1020 Pfam Pumilio-family RNA binding repeat 833 868 IPR001313 GO:0003723
Lal9g0217 1020 MobiDBLite consensus disorder prediction 380 399 - -
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 757 792 IPR001313 GO:0003723
Lal9g0217 1020 ProSiteProfiles Pumilio RNA-binding repeat profile. 721 756 IPR001313 GO:0003723
Lal9g0217 1020 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1013 - -
Lal9g0217 1020 Gene3D - 665 1011 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0217 Lal-Chr9 1329345 1336132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0217 K17943 - gmx:100803806 1604.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0217 9 1329345 1336132 Lal9g0217 9 1329345 1336132 ECH