Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0181 ATGCCGAAGCAAATTCACGAGATTAAAGACTTCCTCCTCACTGCACGTAGGAAGGATGCACGGTCTGTGAAAATAAAGAGGAGCAAAGATGTGGTTAAGTTCAAGGTTCGTTGCTCCAAGTACCTTTACACCCTTTCTGTGTTCGACACTGACAAGGCTGATAAGTTGAAGCAATCACTTCCTCCAGATGGATGGAAAAGCCGTTGGGTTTTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCTGGTACCTTTAAGTTCACTGCTGGAAAATGGCCTGGAGATCCAGATGATAAAGGTATTCAGACATATAATGATGCTAAGCATTATGCCATATCTGCTAAGATACCAGAGTTAAGCAATAAGAATAGAACTCTGGTGGTTCAGTATTCTATTAAATTTGAGCAGGACATTGAATGTGGTGGAGGTTACATCAAACTCCTTTCTGGTTTTGTTAATCAGAAGAAGTTTGGTGGTGATACTCCTTATAGTTTGATGTTCGGACCAGATTTATGTGGCTCGCAGACTAAGAAGCTCCATGTTATACTATCATACCAGGGGCAGAATTACCCTATTAGAAAGGACTTACAATGTGAAACAGACAAATTGACTCATTTCTATACATTTATTCTAAGGCCCGATGCCTCTTATAGCGTCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGTATGTACACAGATTGGGACATCCTTCCTCCACGGAAAATCAAAGACATCAAGGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCAAAAGATGTCAAGCCTGAGGGATATGATTCAGTTCCATCCGAAATTCCTGATCCAAAAGCAAATGAGCCTGTGGACTGGGATGAAGAAGAAGATGGACTATGGAAGCCCCCCAAAATTCCTAATCCAGCGTACAAAGGACCATGGAAACACAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGATTCCCTGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTGCTGAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAAGCTGGTTCAATTTTCGACAATATCTTAATTTGTGATGACTCACAGTATGCAAGGCAAGTTGTGGAAGGATTTATGGCTGATAACAGAGAGCCAGAAAAGGAAGCTTTTGAAGAAGCAGAAAAAGTAAGAAAGGCTAAAGAAGAAGAGGAAGCACAGAGAGCTAGAGAAGAGGGCGAAAAGAGGAGGAGGGAGAGGGGTCATAACCATGGAGATAGGAGGCGCCGTAGAAGGCATGATCACATGGATGATTATTACCATGATGAACTTTGA 1341 0.4183 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSVFDTDKADKLKQSLPPDGWKSRWVLSDWKRSEGKAGTFKFTAGKWPGDPDDKGIQTYNDAKHYAISAKIPELSNKNRTLVVQYSIKFEQDIECGGGYIKLLSGFVNQKKFGGDTPYSLMFGPDLCGSQTKKLHVILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDIKAKKPADWDDREYIEDPKDVKPEGYDSVPSEIPDPKANEPVDWDEEEDGLWKPPKIPNPAYKGPWKHKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIFDNILICDDSQYARQVVEGFMADNREPEKEAFEEAEKVRKAKEEEEAQRAREEGEKRRRERGHNHGDRRRRRRHDHMDDYYHDEL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0181 446 PANTHER CALRETICULIN AND CALNEXIN 48 446 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 MobiDBLite consensus disorder prediction 256 301 - -
Lal9g0181 446 Pfam Calreticulin family 63 293 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 Pfam Calreticulin family 294 367 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 SUPERFAMILY Concanavalin A-like lectins/glucanases 63 252 IPR013320 -
Lal9g0181 446 PRINTS Calreticulin signature 134 152 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 PRINTS Calreticulin signature 160 176 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 PRINTS Calreticulin signature 249 262 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 PRINTS Calreticulin signature 277 299 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 PRINTS Calreticulin signature 315 334 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 PRINTS Calreticulin signature 348 368 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 Gene3D - 1 61 IPR038464 -
Lal9g0181 446 SUPERFAMILY P-domain of calnexin/calreticulin 235 350 IPR009033 GO:0005509|GO:0005515
Lal9g0181 446 Gene3D - 62 270 - -
Lal9g0181 446 Gene3D - 309 412 - -
Lal9g0181 446 MobiDBLite consensus disorder prediction 387 446 - -
Lal9g0181 446 Coils Coil 389 421 - -
Lal9g0181 446 Pfam Ribosomal L38e protein family 2 63 IPR002675 GO:0003735|GO:0005840|GO:0006412
Lal9g0181 446 ProSitePatterns Calreticulin family signature 1. 132 147 IPR018124 GO:0005509
Lal9g0181 446 PIRSF Calreticulin 35 446 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Lal9g0181 446 MobiDBLite consensus disorder prediction 387 422 - -
Lal9g0181 446 MobiDBLite consensus disorder prediction 256 270 - -
Lal9g0181 446 ProSitePatterns Calreticulin family signature 2. 164 172 IPR018124 GO:0005509
Lal9g0181 446 PANTHER CALRETICULIN-3 48 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0181 Lal-Chr9 1126814 1134894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0181 96 374 Miscellaneous Gene Families AT5G61790 37.048 8.10e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0181 K08057 - gmx:100776524 640.958