Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0149 ATGATTCTACTGAGTTCGGTTATGGCCAGTGATTCTTTTGTAATCTCTAATGGCGTTGGTAATGGCAATGACAATGTCAACCCGCAGCCTATTCCGCAGAGAACTTACCAGGCAGTAATGATTGCAACTCGAGATATGGGTATTTCTAAGGATGGAAAATTACCCTGGACATTACCCACTGATGCCAATTTTTTTGATGAAATCACCACCACAACATCTGACCCTGGGAAAAAGAATGCCGTTGTAATGGGTAGAAAATCATGGGAGGGTATCCCTCCTGAGAACAGACCACTCTCCGGTCGCCTCAATGTTGTTCTGACTCGCTCCGGTAGTTTTGATATTGCAACAGCAGAGAACGTTGTTATTTGTGGAAGTGTGTCCTCAGCTTTGGAACTGTTGGCTTCTTCTCCATACTGTCTGTCAATTGAGAAAGTATTTATTACAGGAGGTGGTGAGATTTTGAGAGAGACTCTTAATGCACCTGGATGTGAAGCTGCCCACATTACAGAAATTGAGGCAACTCAGGCAAGCATTGAGTGTGACACTTTTATGCCTCAAATTGATACCTCTATATTTCAGCTATGGTACTCGTCATTCCCTTTGGTGGAAAACAACATTCGATATTCCTTCAACACTTATGTGCGTGTGAGGAGTTGTCCAATAGAGTCCTTGAGTCAGAATAATGATCCAATTTTTGATAATAATTCGAACACTACCAAATTTGAGGTCCACAAATTTTCTTTTCTTCCTAAAATGATTTTTGATAGACATGAGGAGTACAAATATCTTAGGTTGGTTCAAGGAATCATTTCTGAAGGTAATACTAAGGATGACAGAACAGGGACCGGTACCTTGTCTAAGTTTGGATGCCAGATGAGATTCAACCTGCGCAAAAGCTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGCGTGGGGTTGTTGAAGAACTTCTCTGGTTTATCAGTGGCTCAACGAATGCCAAGAATATTGAATGGTCAGCATCTGTTTGTTGCATTGTTTATGTGTTGATACTTGTTGGTTTTAAAGACAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCTAGGTATACTGACATGCATGATGACTACTCTGGTCAAGGAGTTGATCAACTATTAGATGTTATCAACAAGATAAAGCACAATCCTGATGATCGACGGATCATTATTTCATCGTGGAATCCAGCTGATCTTAAATTGATGGCACTTCCACCTTGTCACATGTTTGCTCAGTTCTATGTAGCAAATGGGGAGTTATCCTGCCAAATGTACCAACGATCTGCTGACATGGGCCTGGGTGTGCCGTTTAATATTGCATCTTATGCGCTGCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTTAGACCTCTGCAGGAACAGCTCCAAAACCTTCCAAAGCCTTTTCCGATTTTGAAGATAAATCCAAAAAAGAAGGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAAATAGAGATGAAGATAGCTGTTTAG 1617 0.4131 MILLSSVMASDSFVISNGVGNGNDNVNPQPIPQRTYQAVMIATRDMGISKDGKLPWTLPTDANFFDEITTTTSDPGKKNAVVMGRKSWEGIPPENRPLSGRLNVVLTRSGSFDIATAENVVICGSVSSALELLASSPYCLSIEKVFITGGGEILRETLNAPGCEAAHITEIEATQASIECDTFMPQIDTSIFQLWYSSFPLVENNIRYSFNTYVRVRSCPIESLSQNNDPIFDNNSNTTKFEVHKFSFLPKMIFDRHEEYKYLRLVQGIISEGNTKDDRTGTGTLSKFGCQMRFNLRKSFPLLTTKKVFWRGVVEELLWFISGSTNAKNIEWSASVCCIVYVLILVGFKDREEGDLGPVYGFQWRHFGARYTDMHDDYSGQGVDQLLDVINKIKHNPDDRRIIISSWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNLPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKIAV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0149 538 CDD DHFR 42 214 IPR001796 GO:0004146|GO:0046654
Lal9g0149 538 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 251 538 IPR036926 -
Lal9g0149 538 CDD TS_Pyrimidine_HMase 262 491 IPR023451 -
Lal9g0149 538 Gene3D Dihydrofolate Reductase, subunit A 19 217 IPR024072 -
Lal9g0149 538 TIGRFAM thym_sym: thymidylate synthase 351 538 IPR000398 GO:0004799|GO:0006231
Lal9g0149 538 Hamap Thymidylate synthase [thyA]. 259 538 IPR000398 GO:0004799|GO:0006231
Lal9g0149 538 PRINTS Thymidylate synthase family signature 300 321 IPR000398 GO:0004799|GO:0006231
Lal9g0149 538 PRINTS Thymidylate synthase family signature 389 408 IPR000398 GO:0004799|GO:0006231
Lal9g0149 538 PRINTS Thymidylate synthase family signature 415 430 IPR000398 GO:0004799|GO:0006231
Lal9g0149 538 PRINTS Thymidylate synthase family signature 433 459 IPR000398 GO:0004799|GO:0006231
Lal9g0149 538 PRINTS Thymidylate synthase family signature 471 488 IPR000398 GO:0004799|GO:0006231
Lal9g0149 538 Pfam Thymidylate synthase 261 538 IPR023451 -
Lal9g0149 538 SUPERFAMILY Dihydrofolate reductase-like 42 215 IPR024072 -
Lal9g0149 538 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 8 538 - -
Lal9g0149 538 Pfam Dihydrofolate reductase 38 215 IPR001796 GO:0004146|GO:0046654
Lal9g0149 538 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 35 215 IPR001796 GO:0004146|GO:0046654
Lal9g0149 538 ProSitePatterns Thymidylate synthase active site. 400 428 IPR020940 GO:0004799|GO:0006231
Lal9g0149 538 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 242 538 IPR036926 -
Lal9g0149 538 PANTHER THYMIDYLATE SYNTHASE 1 8 538 IPR045097 GO:0016741
Lal9g0149 538 PIRSF DHFR-TS 17 538 IPR012262 GO:0004146|GO:0004799|GO:0006730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0149 Lal-Chr9 950433 955615 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0149 K13998 - gmx:100786311 900.968