Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0073 ATGGCTAACATTAGCAATGATGAAACTGCTCAACCCAACATTTCTCCCTCAATGCAGCCTCACCCCACTCTAAAGACCGTTGATTCTCAATCTGTTCTCAGAAGATTGCAATCAGAATTGATGGCCTTGATGATGAGTGGAGATTCTGGTATATCAGCATTTCCTGAGGAGGACAACATATTCTCATGGAAAGGAACAATAAAAGGAAGCAAAGATACTGTTTTTGAAGACACAGAATATAAATTATTCCTTTCTTTTCCCAATGATTACCCTTTTAAGCCTCCTAAAGTCAAGTTTGAAACAACCTGCTTCCACCCTAATGTTGATGTTCATGGCAATATATGTTTGGACATACTTCAGGATAAATGGTCTTCTGCTTATGATGTCAGAACAATTCTTCTATCCATCCAAAGTCTGCTAGGAGAGCCAAACACTAGTTCACCTCTAAATCCACAAGCAGCACAGCTTTGGTGCAATCAAGAAGAATACAGAAAGGTGGTGGAGAAGTTGTACAAATCTGCAAGTGCTTAG 531 0.3955 MANISNDETAQPNISPSMQPHPTLKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFSWKGTIKGSKDTVFEDTEYKLFLSFPNDYPFKPPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNTSSPLNPQAAQLWCNQEEYRKVVEKLYKSASA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0073 176 CDD UBCc 34 171 IPR000608 -
Lal9g0073 176 Pfam Ubiquitin-conjugating enzyme 35 169 IPR000608 -
Lal9g0073 176 Gene3D Ubiquitin Conjugating Enzyme 25 175 IPR016135 -
Lal9g0073 176 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 104 119 IPR023313 -
Lal9g0073 176 SUPERFAMILY UBC-like 29 170 IPR016135 -
Lal9g0073 176 MobiDBLite consensus disorder prediction 1 26 - -
Lal9g0073 176 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 17 173 - -
Lal9g0073 176 SMART ubc_7 34 176 - -
Lal9g0073 176 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 20 17 173 - -
Lal9g0073 176 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 31 176 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0073 Lal-Chr9 439719 441169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0073 33 140 Miscellaneous Gene Families AT3G17000 31.858 1.87e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0073 K06688 - gmx:100305664 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0073 9 439719 441169 Lal9g0073 9 439719 441169 ECH