Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0056 ATGGTGAGTGTAGAAGAAATCCGCAATGCTCAAAGGGCACAAGGACCTGCTACCATTATGGCCATTGGTACTGCAACTCCATCAAACTGTGTTGATCAAAGCACTTATCCTGATTTCTACTTCAGAGTCACTAACAGTGAGCACAAGACCGAGCTTAAAGAGAAATTCAAACGCATGCTAAGTAACTATCACACCAATCATCCAAGCAAAGGAAACATACGTGAAAAGTCTATGATCAAGAAGAGATATATGTACTTAACAGAAGATATCTTAAAAGAGAACCCTAGTGTTTGTGCTTATATGGCACCTTCCTTAGATGCTAGGCAGGACATGGTGGTTGTGGAAGTACCAAGATTGGGGAAAGAGGCTGCAACAAAGGCCATAAAAGAATGGGGCCAACCAAAATCTAAGATCACCCACTTAATATTTTGCACCACTAGTGGTGTTGATATGCCCGGTGCTGATTATCAACTCACCAAACTCCTAGGACTTCGACCATATGTGAAGCGTTACATGATGTACCAACAAGGGTGCTTTGCAGGTGGTACGGTGCTACGTTTGGCTAAAGACTTGGCTGAAAACAACAAAGGTGCAAGAGTCCTAGTTGTTTGCTCAGAAATCACTGCAGTCACATTTCGCGGCCCTAGTGACACTCACCTAGATAGCCTTGTTGGGCAAGCACTTTTTGGAGATGGAGCAGCTGCACTCATTGTTGGTTCAGACCCATTGCCAGAGATTGAGAAGCCTTTGTTTGAACTTGTATGGACTGCACAGACAATCCTACCGGACAGTGAAGGTGCTATTGATGGACACTTACGTGAAGTCGGGCTCACATTTCATCTCCTTAAAGATGTTCCCGGGCTCATCTCAAAGAACATTGAGAAAGCCTTGGTTGAAGCTTTCCAACCATTGGGAATCTCTGATTATAACTCAATCTTCTGGATTGCACACCCTGGTGGACCTGCAATTCTAGACCAAGTTGAGCTTAAGTTGGGGTTGAAACCAGAGAAGATGAGGGCCACTAGGCATGTGCTTAGTGAATATGGTAATATGTCAAGTGCATGTGTGTTGTTTATCATGGATGAGATGAGGAAGAAATCAGCTCAAGATGGACTTAAAACCACCGGTGAAGGACTTGAATGGGGTGTGCTATTTGGTTTTGGACCTGGACTCACAGTAGAAACTGTTGTGCTCCACAGTGTGGCTGCATAA 1212 0.4422 MVSVEEIRNAQRAQGPATIMAIGTATPSNCVDQSTYPDFYFRVTNSEHKTELKEKFKRMLSNYHTNHPSKGNIREKSMIKKRYMYLTEDILKENPSVCAYMAPSLDARQDMVVVEVPRLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPLPEIEKPLFELVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVELKLGLKPEKMRATRHVLSEYGNMSSACVLFIMDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTVETVVLHSVAA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0056 403 PIRSF PKS_III 2 403 IPR011141 GO:0009058|GO:0016747
Lal9g0056 403 Gene3D - 1 249 IPR016039 GO:0016746
Lal9g0056 403 Pfam Chalcone and stilbene synthases, N-terminal domain 5 242 IPR001099 -
Lal9g0056 403 PANTHER CHALCONE SYNTHASE 3 2 402 - -
Lal9g0056 403 ProSitePatterns Chalcone and stilbene synthases active site. 170 186 IPR018088 GO:0009058|GO:0016746
Lal9g0056 403 SUPERFAMILY Thiolase-like 1 247 IPR016039 GO:0016746
Lal9g0056 403 SUPERFAMILY Thiolase-like 249 400 IPR016039 GO:0016746
Lal9g0056 403 Pfam Chalcone and stilbene synthases, C-terminal domain 252 401 IPR012328 -
Lal9g0056 403 CDD CHS_like 16 398 - -
Lal9g0056 403 Gene3D - 250 403 IPR016039 GO:0016746
Lal9g0056 403 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 402 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0056 Lal-Chr9 344426 346541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0056 164 397 Miscellaneous Gene Families AT3G52160 28.631 8.31e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0056 K00660 - gmx:121175285 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0056 9 344426 346541 Lal9g0056 9 344426 346541 ECH