LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g0054	ATGGCCTCCGATCCTGAACAACCTCCTAGTTCCTTTCTCGTTAAGGAAGGAAAATCATCCAGAGAGATTGGTAGTGCAAGGGAACCTCTGCTTAATGTTAATGGGGCTCATGTCTCTGAAAACTATTCTATCTATGCTGCAATTCTCCCATTTCTCTTCCCAGCTCTTGGTGGGTTACTGTATGGCTATGACATAGGTGCCACATCTTCTGCAACAATTTCCATTCAGTCACCAACACTGAGTGGAATAACCTGGCACAACTTGTCGTCTGTTGAAATTGGGCTTGTAACTAGTGGGTCATTATATGGTGCCTTGATTGGCTCTCTGTTGGCCTTCAATGTTGCTGACTTCATAGGTAGAAAAAGGGAACTCCTTGCAGCTGCGTTGCTGTATCTTGTTGGAGCCCTTGTAACAGCAGTAGCTCCTAATTTTCCTTTATTGGTGGTTGGGAGACTTGTATATGGCTTAGGAATTGGATTGGCAATGCATGCTGCTCCGATGTACATTGCAGAGACAGCTCCAACATCAATACGTGGATTACTAATCTCTTTGAAAGAGTTCTTCATAGTACTTGGGATGGTTGCGGGATATGGAATAGGTAGCCTTTTGGTAGACATTGTAGCTGGGTGGCGGTATATGTTTGGAATTAGTAGCCCTTTGGCACTAATCATGGGAATTGGAATGTGTTTGCTTCCAGATTCTCCTAGATGGCTACTTTTATGTGCTATACAGGGAAAAGGGGATAGTCAGAATTTGAAAGACACAGCGATTTGTTGTTTGTGCCAGCTTCGAGGTCAAGCTATTGGTGACTCAGCTCCTCAGCAGGTAGATGAGATTCTGGCAGAGCTATCTTATGTAGGTGAAGAAAAAGAAGTTACATTTGGAGAATTGTTCCGAGGGAAATGCAAGAAAGCCCTCGTGATCGGAGGAGGATTGGTCTTTTTTCAACAGATCACAGGGCAACCAAGTGTGCTCTACTATGCTGGATCAATCCTTCAGAGCGCAGGATTCTCCGCAGCATCTGATGCAACCCGGGTCTCTATTCTCCTTGGCCTTTTCAAGTTGATTATGACTGGAGCTGCTGTTGGTGTTGTTGATAGACTCGGGAGGAGACCATTACTACTTGGGGGAGTTTCAGGGATGGCTATCTCTTTGTTCCTTCTGGGTTCATATTACATCTTCTTGGATAACATAGCAGTTGTTGCTGTAATTGGTCTGCTGTTGTATGTAGGCTGTTATCAGATTTCTTTTGGTCCAATTGGTTGGCTTATGATATCAGAGGTTTTTCCCTTGCGCCTAAGAGGTCGAGGACTTAGTATAGCTGTTCTTGTCAATTTTGCTACGAATGCCCTTGTGACATTTGCCTTTTCTCCTCTGAAGGAATTACTGGGAGCAGGAATCTTATTTTACATATTTTGTGCAATAGCCGCAGCATCTCTTCTATTCATATACTTTATTGTGCCAGAAACCAAGGGGCTTACCCTGGAGGAGATTGAGGCCAAATGTTTATAG	1512	0.4392	MASDPEQPPSSFLVKEGKSSREIGSAREPLLNVNGAHVSENYSIYAAILPFLFPALGGLLYGYDIGATSSATISIQSPTLSGITWHNLSSVEIGLVTSGSLYGALIGSLLAFNVADFIGRKRELLAAALLYLVGALVTAVAPNFPLLVVGRLVYGLGIGLAMHAAPMYIAETAPTSIRGLLISLKEFFIVLGMVAGYGIGSLLVDIVAGWRYMFGISSPLALIMGIGMCLLPDSPRWLLLCAIQGKGDSQNLKDTAICCLCQLRGQAIGDSAPQQVDEILAELSYVGEEKEVTFGELFRGKCKKALVIGGGLVFFQQITGQPSVLYYAGSILQSAGFSAASDATRVSILLGLFKLIMTGAAVGVVDRLGRRPLLLGGVSGMAISLFLLGSYYIFLDNIAVVAVIGLLLYVGCYQISFGPIGWLMISEVFPLRLRGRGLSIAVLVNFATNALVTFAFSPLKELLGAGILFYIFCAIAAASLLFIYFIVPETKGLTLEEIEAKCL	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g0054	503	CDD	MFS_GLUT10_12_Class3_like	53	498	-	-
	Lal9g0054	503	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lal9g0054	503	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	50	491	IPR020846	GO:0022857
	Lal9g0054	503	ProSitePatterns	Sugar transport proteins signature 2.	153	178	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lal9g0054	503	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 1	17	503	-	-
	Lal9g0054	503	TIGRFAM	SP: MFS transporter, sugar porter (SP) family	42	498	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal9g0054	503	PRINTS	Sugar transporter signature	58	68	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal9g0054	503	PRINTS	Sugar transporter signature	148	167	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal9g0054	503	PRINTS	Sugar transporter signature	316	326	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal9g0054	503	PRINTS	Sugar transporter signature	403	424	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal9g0054	503	PRINTS	Sugar transporter signature	426	438	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal9g0054	503	ProSitePatterns	Sugar transport proteins signature 1.	361	377	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lal9g0054	503	Gene3D	MFS general substrate transporter like domains	40	501	IPR036259	-
	Lal9g0054	503	ProSitePatterns	Sugar transport proteins signature 1.	111	128	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lal9g0054	503	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 2	17	503	-	-
	Lal9g0054	503	Pfam	Sugar (and other) transporter	53	500	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Lal9g0054	503	SUPERFAMILY	MFS general substrate transporter	51	499	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g0054	Lal-Chr9	328809	334949	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal9g0054	1	503	Organic Solute Cotransporters	AT5G17010	74.851	0.0	739

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g0054	-		-	lja:Lj3g3v3639770.1	782.326

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal9g0054	9	328809	334949	Lal9g0054	9	328809	334949	ECH